{"id":"https://openalex.org/W3169035495","doi":"https://doi.org/10.1007/s10278-022-00683-y","title":"Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology","display_name":"Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology","publication_year":2022,"publication_date":"2022-08-22","ids":{"openalex":"https://openalex.org/W3169035495","doi":"https://doi.org/10.1007/s10278-022-00683-y","mag":"3169035495","pmid":"https://pubmed.ncbi.nlm.nih.gov/35995898"},"language":"en","primary_location":{"id":"doi:10.1007/s10278-022-00683-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10278-022-00683-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10278-022-00683-y.pdf","source":{"id":"https://openalex.org/S62275304","display_name":"Journal of Digital Imaging","issn_l":"0897-1889","issn":["0897-1889","1618-727X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Digital Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10278-022-00683-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079669314","display_name":"Christopher P. Bridge","orcid":"https://orcid.org/0000-0002-2242-351X"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210127055","display_name":"Athinoula A. Martinos Center for Biomedical Imaging","ror":"https://ror.org/032q5ym94","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I48633490","display_name":"Mass General Brigham","ror":"https://ror.org/04py2rh25","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher P. Bridge","raw_affiliation_strings":["MGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA","Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA"],"raw_orcid":"https://orcid.org/0000-0002-2242-351X","affiliations":[{"raw_affiliation_string":"MGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA","institution_ids":["https://openalex.org/I48633490"]},{"raw_affiliation_string":"Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210127055","https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054666447","display_name":"Chris Gorman","orcid":"https://orcid.org/0000-0002-4546-5376"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Gorman","raw_affiliation_strings":["Computational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070402641","display_name":"Steven C. Pieper","orcid":"https://orcid.org/0009-0003-4143-6812"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steven Pieper","raw_affiliation_strings":["Isomics, Inc., Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Isomics, Inc., Cambridge, MA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008538706","display_name":"Sean Doyle","orcid":"https://orcid.org/0000-0002-1617-6356"},"institutions":[{"id":"https://openalex.org/I48633490","display_name":"Mass General Brigham","ror":"https://ror.org/04py2rh25","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean W. Doyle","raw_affiliation_strings":["MGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA","institution_ids":["https://openalex.org/I48633490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067299042","display_name":"Jochen K. Lennerz","orcid":"https://orcid.org/0000-0003-2434-4978"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jochen K. Lennerz","raw_affiliation_strings":["Center for Integrated Diagnostics, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA","Department of Pathology, Harvard Medical School, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Integrated Diagnostics, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210087915"]},{"raw_affiliation_string":"Department of Pathology, Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039535916","display_name":"Jayashree Kalpathy\u2013Cramer","orcid":"https://orcid.org/0000-0001-8906-9618"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210127055","display_name":"Athinoula A. Martinos Center for Biomedical Imaging","ror":"https://ror.org/032q5ym94","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I48633490","display_name":"Mass General Brigham","ror":"https://ror.org/04py2rh25","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jayashree Kalpathy-Cramer","raw_affiliation_strings":["Department of Radiology, Harvard Medical School, Boston, MA, USA","MGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA","Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"MGH & BWH Center for Clinical Data Science, Mass General Brigham, Boston, MA, USA","institution_ids":["https://openalex.org/I48633490"]},{"raw_affiliation_string":"Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210127055","https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013106687","display_name":"David Clunie","orcid":"https://orcid.org/0000-0002-2406-1145"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David A. Clunie","raw_affiliation_strings":["PixelMed Publishing, LLC., Bangor, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PixelMed Publishing, LLC., Bangor, PA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031919834","display_name":"Andriy Fedorov","orcid":"https://orcid.org/0000-0003-4806-9413"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andriy Y. Fedorov","raw_affiliation_strings":["Department of Radiology, Harvard Medical School, Boston, MA, USA","Surgical Planning Laboratory, Department of Radiology, Brigham and Women's Hospital, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Surgical Planning Laboratory, Department of Radiology, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078640326","display_name":"Markus D. Herrmann","orcid":"https://orcid.org/0000-0002-7257-9205"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Markus D. Herrmann","raw_affiliation_strings":["Computational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA. mdherrmann@mgh.harvard.edu","Department of Pathology, Harvard Medical School, Boston, MA, USA. mdherrmann@mgh.harvard.edu","Computational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA. mdherrmann@mgh.harvard.edu","institution_ids":["https://openalex.org/I4210087915"]},{"raw_affiliation_string":"Department of Pathology, Harvard Medical School, Boston, MA, USA. mdherrmann@mgh.harvard.edu","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Computational Pathology, Department of Pathology, Massachusetts General Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I4210087915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5079669314"],"corresponding_institution_ids":["https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":{"value":3190,"currency":"EUR","value_usd":4190},"fwci":2.7743,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.91382242,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"6","first_page":"1719","last_page":"1737"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dicom","display_name":"DICOM","score":0.8818546533584595},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8110823035240173},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.803168535232544},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7196274995803833},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.5404407382011414},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4634167551994324},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.380578875541687},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2762675881385803},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.20602205395698547}],"concepts":[{"id":"https://openalex.org/C77331912","wikidata":"https://www.wikidata.org/wiki/Q81095","display_name":"DICOM","level":2,"score":0.8818546533584595},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8110823035240173},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.803168535232544},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7196274995803833},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.5404407382011414},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4634167551994324},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.380578875541687},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2762675881385803},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.20602205395698547}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011871","descriptor_name":"Radiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011871","descriptor_name":"Radiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011871","descriptor_name":"Radiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011871","descriptor_name":"Radiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011871","descriptor_name":"Radiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1007/s10278-022-00683-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10278-022-00683-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10278-022-00683-y.pdf","source":{"id":"https://openalex.org/S62275304","display_name":"Journal of Digital Imaging","issn_l":"0897-1889","issn":["0897-1889","1618-727X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Digital Imaging","raw_type":"journal-article"},{"id":"pmid:35995898","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35995898","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of digital imaging","raw_type":null},{"id":"pmh:oai:arXiv.org:2106.07806","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2106.07806","pdf_url":"https://arxiv.org/pdf/2106.07806","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9712874","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9712874","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Digit Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10278-022-00683-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10278-022-00683-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10278-022-00683-y.pdf","source":{"id":"https://openalex.org/S62275304","display_name":"Journal of Digital Imaging","issn_l":"0897-1889","issn":["0897-1889","1618-727X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Digital Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1582147063","display_name":null,"funder_award_id":"5R01CA235589","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G400541027","display_name":null,"funder_award_id":"U01CA242879","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6123777268","display_name":null,"funder_award_id":"5P41EB015902","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6858687417","display_name":null,"funder_award_id":"HHSN26110071","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7125543585","display_name":null,"funder_award_id":"U24 CA264044","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7194488897","display_name":null,"funder_award_id":"P41EB028741","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3169035495.pdf","grobid_xml":"https://content.openalex.org/works/W3169035495.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W34873230","https://openalex.org/W1482436805","https://openalex.org/W1558633536","https://openalex.org/W1986649315","https://openalex.org/W2015159529","https://openalex.org/W2026616100","https://openalex.org/W2061567202","https://openalex.org/W2061757011","https://openalex.org/W2083927153","https://openalex.org/W2101234009","https://openalex.org/W2108598243","https://openalex.org/W2148453600","https://openalex.org/W2172647018","https://openalex.org/W2194775991","https://openalex.org/W2290321704","https://openalex.org/W2302501749","https://openalex.org/W2402144811","https://openalex.org/W2415281784","https://openalex.org/W2503550904","https://openalex.org/W2608976729","https://openalex.org/W2757862658","https://openalex.org/W2760946358","https://openalex.org/W2793249006","https://openalex.org/W2799247497","https://openalex.org/W2810349670","https://openalex.org/W2905969903","https://openalex.org/W2919115771","https://openalex.org/W2926213418","https://openalex.org/W2940562610","https://openalex.org/W2946185430","https://openalex.org/W2947665709","https://openalex.org/W2956228567","https://openalex.org/W2963351448","https://openalex.org/W2964756323","https://openalex.org/W2970971581","https://openalex.org/W2990353513","https://openalex.org/W2998175747","https://openalex.org/W3000207138","https://openalex.org/W3003257820","https://openalex.org/W3035965352","https://openalex.org/W3037083567","https://openalex.org/W3039368862","https://openalex.org/W3093416812","https://openalex.org/W3099878876","https://openalex.org/W3103145119","https://openalex.org/W3105054740","https://openalex.org/W3118813946","https://openalex.org/W3119527628","https://openalex.org/W3135547872","https://openalex.org/W3136933888","https://openalex.org/W3139087012","https://openalex.org/W3159302505","https://openalex.org/W3160261825","https://openalex.org/W3168115304","https://openalex.org/W3210232381","https://openalex.org/W4205772728","https://openalex.org/W6675354045","https://openalex.org/W6713134421","https://openalex.org/W6803376173"],"related_works":["https://openalex.org/W2352944256","https://openalex.org/W2528730528","https://openalex.org/W2358954258","https://openalex.org/W2376146719","https://openalex.org/W2355550873","https://openalex.org/W2370879019","https://openalex.org/W1513288651","https://openalex.org/W2351853078","https://openalex.org/W2347834369","https://openalex.org/W3165454636"],"abstract_inverted_index":{"standard":[0,30,83,202],"specifies":[1],"information":[2,91],"object":[3],"definitions":[4],"(IODs)":[5],"and":[6,11,16,22,41,48,84,87,112,122,129,149,153,156,170,183,187,194,203,217,223,232],"services":[7],"for":[8,34,45,72,108,119,160],"the":[9,26,29,38,61,73,82,115,138,144,200,219,228],"representation":[10,111],"communication":[12],"of":[13,28,81,89,99,131,214],"digital":[14],"images":[15],"related":[17],"information,":[18],"including":[19],"image-derived":[20,90],"annotations":[21],"analysis":[23],"results.":[24],"However,":[25],"complexity":[27],"represents":[31],"an":[32],"obstacle":[33],"its":[35],"adoption":[36],"in":[37,55,92,95,192],"ML":[39,151,190,215,220],"community":[40],"creates":[42],"a":[43,66,96],"need":[44],"software":[46],"libraries":[47],"tools":[49],"that":[50,77,142],"simplify":[51],"working":[52],"with":[53,137,167,199,205],"datasets":[54],"DICOM":[56,93,201],"format.":[57],"Here":[58],"we":[59,226],"present":[60],"highdicom":[62,103,134,180],"library,":[63],"which":[64],"provides":[65],"high-level":[67],"application":[68],"programming":[69,75],"interface":[70],"(API)":[71],"Python":[74,100,117],"language":[76],"abstracts":[78],"low-level":[79],"details":[80],"enables":[85,181],"encoding":[86],"decoding":[88],"format":[94],"few":[97],"lines":[98],"code.":[101],"The":[102],"library":[104,229],"leverages":[105],"NumPy":[106],"arrays":[107],"efficient":[109],"data":[110,145],"ties":[113],"into":[114],"extensive":[116],"ecosystem":[118],"image":[120],"processing":[121],"machine":[123],"learning.":[124],"Simultaneously,":[125],"by":[126,175],"simplifying":[127],"creation":[128],"parsing":[130],"DICOM-compliant":[132],"files,":[133],"achieves":[135],"interoperability":[136],"medical":[139],"imaging":[140],"systems":[141,207],"hold":[143],"used":[146],"to":[147,185],"train":[148,186],"run":[150],"models,":[152],"ultimately":[154],"communicate":[155],"store":[157],"model":[158,221],"outputs":[159],"clinical":[161,206],"use.":[162],"We":[163],"demonstrate":[164],"through":[165],"experiments":[166],"slide":[168],"microscopy":[169],"computed":[171],"tomography":[172],"imaging,":[173],"that,":[174],"bridging":[176],"these":[177],"two":[178],"ecosystems,":[179],"developers":[182],"researchers":[184],"evaluate":[188],"state-of-the-art":[189],"models":[191],"pathology":[193],"radiology":[195],"while":[196],"remaining":[197],"compliant":[198],"interoperable":[204],"at":[208,234],"all":[209],"stages.":[210],"To":[211],"promote":[212],"standardization":[213],"research":[216],"streamline":[218],"development":[222],"deployment":[224],"process,":[225],"made":[227],"available":[230],"free":[231],"open-source":[233],"https://github.com/herrmannlab/highdicom":[235],".":[236]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
