{"id":"https://openalex.org/W2952100895","doi":"https://doi.org/10.1007/s10278-019-00234-y","title":"Toward Complete Structured Information Extraction from Radiology Reports Using Machine Learning","display_name":"Toward Complete Structured Information Extraction from Radiology Reports Using Machine Learning","publication_year":2019,"publication_date":"2019-06-19","ids":{"openalex":"https://openalex.org/W2952100895","doi":"https://doi.org/10.1007/s10278-019-00234-y","mag":"2952100895","pmid":"https://pubmed.ncbi.nlm.nih.gov/31218554"},"language":"en","primary_location":{"id":"doi:10.1007/s10278-019-00234-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10278-019-00234-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10278-019-00234-y.pdf","source":{"id":"https://openalex.org/S62275304","display_name":"Journal of Digital Imaging","issn_l":"0897-1889","issn":["0897-1889","1618-727X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Digital Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10278-019-00234-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050303546","display_name":"Jackson Steinkamp","orcid":"https://orcid.org/0000-0001-7888-0691"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I2799810409","display_name":"Hospital of the University of Pennsylvania","ror":"https://ror.org/02917wp91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799810409","https://openalex.org/I4210143392"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jackson M. Steinkamp","raw_affiliation_strings":["Boston University School of Medicine, Boston, MA, 02119, USA. jacksonsteinkamp@gmail.com","Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA. jacksonsteinkamp@gmail.com","Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA"],"raw_orcid":"https://orcid.org/0000-0001-7888-0691","affiliations":[{"raw_affiliation_string":"Boston University School of Medicine, Boston, MA, 02119, USA. jacksonsteinkamp@gmail.com","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA. jacksonsteinkamp@gmail.com","institution_ids":["https://openalex.org/I2799810409"]},{"raw_affiliation_string":"Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I2799810409"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078143029","display_name":"Charles Chambers","orcid":"https://orcid.org/0000-0001-6717-0934"},"institutions":[{"id":"https://openalex.org/I2799810409","display_name":"Hospital of the University of Pennsylvania","ror":"https://ror.org/02917wp91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799810409","https://openalex.org/I4210143392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Chambers","raw_affiliation_strings":["Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I2799810409"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088680820","display_name":"Darco Lalevic","orcid":"https://orcid.org/0000-0003-3970-9554"},"institutions":[{"id":"https://openalex.org/I2799810409","display_name":"Hospital of the University of Pennsylvania","ror":"https://ror.org/02917wp91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799810409","https://openalex.org/I4210143392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Darco Lalevic","raw_affiliation_strings":["Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I2799810409"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086955576","display_name":"Hanna M. Zafar","orcid":"https://orcid.org/0000-0001-5874-7607"},"institutions":[{"id":"https://openalex.org/I2799810409","display_name":"Hospital of the University of Pennsylvania","ror":"https://ror.org/02917wp91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799810409","https://openalex.org/I4210143392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanna M. Zafar","raw_affiliation_strings":["Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I2799810409"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038843479","display_name":"Tessa S. Cook","orcid":"https://orcid.org/0000-0002-6007-7267"},"institutions":[{"id":"https://openalex.org/I2799810409","display_name":"Hospital of the University of Pennsylvania","ror":"https://ror.org/02917wp91","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799810409","https://openalex.org/I4210143392"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tessa S. Cook","raw_affiliation_strings":["Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Hospital of the University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I2799810409"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050303546"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I2799810409"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":{"value":3190,"currency":"EUR","value_usd":4190},"fwci":5.7798,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.96783883,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"32","issue":"4","first_page":"554","last_page":"564"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7487714290618896},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.7177939414978027},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.6155343651771545},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.5816820859909058},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.551236629486084},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5121698379516602},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.463077187538147},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43439170718193054},{"id":"https://openalex.org/keywords/information-system","display_name":"Information system","score":0.42899900674819946},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37927645444869995},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.365130752325058},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3424531817436218},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.25540608167648315},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.12567833065986633}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7487714290618896},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.7177939414978027},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.6155343651771545},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.5816820859909058},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.551236629486084},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5121698379516602},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.463077187538147},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43439170718193054},{"id":"https://openalex.org/C180198813","wikidata":"https://www.wikidata.org/wiki/Q121182","display_name":"Information system","level":2,"score":0.42899900674819946},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37927645444869995},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.365130752325058},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3424531817436218},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.25540608167648315},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.12567833065986633},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011873","descriptor_name":"Radiology Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10278-019-00234-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10278-019-00234-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10278-019-00234-y.pdf","source":{"id":"https://openalex.org/S62275304","display_name":"Journal of Digital Imaging","issn_l":"0897-1889","issn":["0897-1889","1618-727X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Digital Imaging","raw_type":"journal-article"},{"id":"pmid:31218554","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31218554","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of digital imaging","raw_type":null},{"id":"pmh:oai:europepmc.org:5628500","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6646440","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10278-019-00234-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10278-019-00234-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10278-019-00234-y.pdf","source":{"id":"https://openalex.org/S62275304","display_name":"Journal of Digital Imaging","issn_l":"0897-1889","issn":["0897-1889","1618-727X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Digital Imaging","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.800000011920929}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952100895.pdf","grobid_xml":"https://content.openalex.org/works/W2952100895.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1869282115","https://openalex.org/W2115570566","https://openalex.org/W2554251665","https://openalex.org/W2739356706","https://openalex.org/W2775521672","https://openalex.org/W2962688168","https://openalex.org/W2963341956","https://openalex.org/W2963441585","https://openalex.org/W2963748441","https://openalex.org/W2963783335","https://openalex.org/W4241300132"],"related_works":["https://openalex.org/W2003578783","https://openalex.org/W2397677514","https://openalex.org/W1495820741","https://openalex.org/W2914293784","https://openalex.org/W2990177913","https://openalex.org/W1451471413","https://openalex.org/W2138729887","https://openalex.org/W2401910071","https://openalex.org/W4323056170","https://openalex.org/W2126732312"],"abstract_inverted_index":{"Unstructured":[0],"and":[1,30,101,124,148,179,183],"semi-structured":[2],"radiology":[3,92,139],"reports":[4,140],"represent":[5],"an":[6,83,160],"underutilized":[7],"trove":[8],"of":[9,34,60,99,121,154,167,185],"information":[10,84,136,161,168],"for":[11,38],"machine":[12],"learning":[13],"(ML)-based":[14],"clinical":[15,143],"informatics":[16],"applications,":[17],"including":[18],"abnormality":[19],"tracking":[20],"systems,":[21],"research":[22],"cohort":[23],"identification,":[24],"point-of-care":[25],"summarization,":[26],"semi-automated":[27],"report":[28],"writing,":[29],"as":[31,109],"a":[32,96,129],"source":[33],"weak":[35],"data":[36],"labels":[37],"training":[39],"image":[40],"processing":[41],"systems.":[42],"Clinical":[43],"ML":[44,173],"systems":[45,67],"must":[46],"be":[47],"interpretable":[48,55],"to":[49,58,132,163,175],"ensure":[50],"user":[51],"trust.":[52],"To":[53],"create":[54],"models":[56,174],"applicable":[57],"all":[59,70,134],"these":[61,80],"tasks,":[62],"we":[63,127],"can":[64],"build":[65],"general-purpose":[66],"which":[68,117],"extract":[69,133,176],"relevant":[71],"human-level":[72],"assertions":[73],"or":[74,111],"\"facts\"":[75],"documented":[76],"in":[77,91,137,151,169],"reports;":[78],"identifying":[79],"facts":[81],"is":[82],"extraction":[85],"(IE)":[86],"task.":[87],"Previous":[88],"IE":[89],"work":[90],"has":[93],"focused":[94],"on":[95],"limited":[97],"set":[98],"information,":[100,178],"extracts":[102],"isolated":[103],"entities":[104,123],"(i.e.,":[105],"single":[106],"words":[107],"such":[108],"\"lesion\"":[110],"\"cyst\")":[112],"rather":[113],"than":[114],"complete":[115],"facts,":[116],"require":[118],"the":[119,152,165,181,186],"linking":[120],"multiple":[122],"modifiers.":[125],"Here,":[126],"develop":[128,171],"prototype":[130],"system":[131],"useful":[135],"abdominopelvic":[138],"(findings,":[141],"recommendations,":[142],"history,":[144],"procedures,":[145],"imaging":[146],"indications":[147],"limitations,":[149],"etc.),":[150],"form":[153],"complete,":[155],"contextualized":[156],"facts.":[157],"We":[158],"construct":[159],"schema":[162],"capture":[164],"bulk":[166],"reports,":[170],"real-time":[172],"this":[177],"demonstrate":[180],"feasibility":[182],"performance":[184],"system.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
