{"id":"https://openalex.org/W2118941696","doi":"https://doi.org/10.1007/s10107-006-0091-3","title":"Continuous optimization methods for structure alignments","display_name":"Continuous optimization methods for structure alignments","publication_year":2007,"publication_date":"2007-01-13","ids":{"openalex":"https://openalex.org/W2118941696","doi":"https://doi.org/10.1007/s10107-006-0091-3","mag":"2118941696"},"language":"en","primary_location":{"id":"doi:10.1007/s10107-006-0091-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10107-006-0091-3","pdf_url":null,"source":{"id":"https://openalex.org/S193920097","display_name":"Mathematical Programming","issn_l":"0025-5610","issn":["0025-5610","1436-4646"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Programming","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074001836","display_name":"Roberto Andreani","orcid":"https://orcid.org/0000-0003-2031-4325"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Roberto Andreani","raw_affiliation_strings":["Department of Applied Mathematics, IMECC-UNICAMP, University of Campinas, CP 6065, 13081-970, Campinas, SP, Brazil","IMECC-UNICAMP, University of Campinas, Department of Applied Mathematics, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, IMECC-UNICAMP, University of Campinas, CP 6065, 13081-970, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"IMECC-UNICAMP, University of Campinas, Department of Applied Mathematics, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066019994","display_name":"J. M. Mart\u0131\u0301nez","orcid":"https://orcid.org/0000-0003-3331-368X"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 Mario Mart\u00ednez","raw_affiliation_strings":["Department of Applied Mathematics, IMECC-UNICAMP, University of Campinas, CP 6065, 13081-970, Campinas, SP, Brazil","IMECC-UNICAMP, University of Campinas, Department of Applied Mathematics, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, IMECC-UNICAMP, University of Campinas, CP 6065, 13081-970, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"IMECC-UNICAMP, University of Campinas, Department of Applied Mathematics, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019517261","display_name":"Leandro Mart\u0131\u0301nez","orcid":"https://orcid.org/0000-0002-6857-1884"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leandro Mart\u00ednez","raw_affiliation_strings":["Institute of Chemistry, State University of Campinas, Campinas, Brazil","State University of Campinas, Institute of Chemistry, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chemistry, State University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"State University of Campinas, Institute of Chemistry, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072069024","display_name":"Fl\u00e1vio Yano","orcid":null},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Fl\u00e1vio Yano","raw_affiliation_strings":["Department of Applied Mathematics, IMECC-UNICAMP, University of Campinas, CP 6065, 13081-970, Campinas, SP, Brazil","IMECC-UNICAMP, University of Campinas, Department of Applied Mathematics, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics, IMECC-UNICAMP, University of Campinas, CP 6065, 13081-970, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"IMECC-UNICAMP, University of Campinas, Department of Applied Mathematics, CP 6065, 13081-970, Campinas, SP, Brazil#TAB#","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5066019994"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":1.4487,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.82906274,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"112","issue":"1","first_page":"93","last_page":"124"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11845","display_name":"Cancer therapeutics and mechanisms","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.5715242028236389},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5656492710113525},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5342340469360352},{"id":"https://openalex.org/keywords/generality","display_name":"Generality","score":0.4780081510543823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4532727301120758},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4530363976955414},{"id":"https://openalex.org/keywords/minification","display_name":"Minification","score":0.452843576669693},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4439707100391388},{"id":"https://openalex.org/keywords/continuous-optimization","display_name":"Continuous optimization","score":0.4430353343486786},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.42201489210128784},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4144039750099182},{"id":"https://openalex.org/keywords/optimization-problem","display_name":"Optimization problem","score":0.4051228165626526},{"id":"https://openalex.org/keywords/multi-swarm-optimization","display_name":"Multi-swarm optimization","score":0.1299452781677246}],"concepts":[{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.5715242028236389},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5656492710113525},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5342340469360352},{"id":"https://openalex.org/C2780767217","wikidata":"https://www.wikidata.org/wiki/Q5532421","display_name":"Generality","level":2,"score":0.4780081510543823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4532727301120758},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4530363976955414},{"id":"https://openalex.org/C147764199","wikidata":"https://www.wikidata.org/wiki/Q6865248","display_name":"Minification","level":2,"score":0.452843576669693},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4439707100391388},{"id":"https://openalex.org/C92995354","wikidata":"https://www.wikidata.org/wiki/Q5165499","display_name":"Continuous optimization","level":4,"score":0.4430353343486786},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.42201489210128784},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4144039750099182},{"id":"https://openalex.org/C137836250","wikidata":"https://www.wikidata.org/wiki/Q984063","display_name":"Optimization problem","level":2,"score":0.4051228165626526},{"id":"https://openalex.org/C122357587","wikidata":"https://www.wikidata.org/wiki/Q6934508","display_name":"Multi-swarm optimization","level":3,"score":0.1299452781677246},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10107-006-0091-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10107-006-0091-3","pdf_url":null,"source":{"id":"https://openalex.org/S193920097","display_name":"Mathematical Programming","issn_l":"0025-5610","issn":["0025-5610","1436-4646"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Programming","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1559074274","https://openalex.org/W1592653146","https://openalex.org/W1970026646","https://openalex.org/W1979147581","https://openalex.org/W2006234834","https://openalex.org/W2022058405","https://openalex.org/W2023790301","https://openalex.org/W2027342230","https://openalex.org/W2031733136","https://openalex.org/W2044474382","https://openalex.org/W2052555812","https://openalex.org/W2055751293","https://openalex.org/W2074231493","https://openalex.org/W2085972085","https://openalex.org/W2087151779","https://openalex.org/W2097471670","https://openalex.org/W2097642323","https://openalex.org/W2097767833","https://openalex.org/W2102475449","https://openalex.org/W2107371918","https://openalex.org/W2108107014","https://openalex.org/W2108138353","https://openalex.org/W2110397834","https://openalex.org/W2125696348","https://openalex.org/W2126016150","https://openalex.org/W2130479394","https://openalex.org/W2137146016","https://openalex.org/W2144998676","https://openalex.org/W2148101168","https://openalex.org/W2150808588","https://openalex.org/W2152326664","https://openalex.org/W2158630348","https://openalex.org/W2798909945","https://openalex.org/W2889977735","https://openalex.org/W3029645440","https://openalex.org/W4293775970","https://openalex.org/W6750968397"],"related_works":["https://openalex.org/W4249772630","https://openalex.org/W2353523849","https://openalex.org/W4309490307","https://openalex.org/W4375949242","https://openalex.org/W2957709178","https://openalex.org/W2907206257","https://openalex.org/W308707143","https://openalex.org/W2557644665","https://openalex.org/W2792234022","https://openalex.org/W2896890876"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-12T21:12:35.861297","created_date":"2025-10-10T00:00:00"}
