{"id":"https://openalex.org/W2018897936","doi":"https://doi.org/10.1007/s10107-003-0493-4","title":"An optimization approach to the problem of protein structure prediction","display_name":"An optimization approach to the problem of protein structure prediction","publication_year":2004,"publication_date":"2004-02-06","ids":{"openalex":"https://openalex.org/W2018897936","doi":"https://doi.org/10.1007/s10107-003-0493-4","mag":"2018897936"},"language":"en","primary_location":{"id":"doi:10.1007/s10107-003-0493-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10107-003-0493-4","pdf_url":null,"source":{"id":"https://openalex.org/S193920097","display_name":"Mathematical Programming","issn_l":"0025-5610","issn":["0025-5610","1436-4646"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Programming","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010432535","display_name":"Elizabeth Eskow","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Elizabeth Eskow","raw_affiliation_strings":["Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110127240","display_name":"Brett W. Bader","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brett Bader","raw_affiliation_strings":["Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110729604","display_name":"Richard Byrd","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Byrd","raw_affiliation_strings":["Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009354743","display_name":"Silvia Crivelli","orcid":"https://orcid.org/0000-0003-1919-1890"},"institutions":[{"id":"https://openalex.org/I4210151627","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521","https://openalex.org/I4210151627"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Silvia Crivelli","raw_affiliation_strings":["Physical Sciences, Life Sciences and NERSC Divisions, Lawrence Berkeley National Laboratory, Berkeley, California, 94720","Lawrence Berkeley National Laboratory, 94720, Berkeley, California#TAB#"],"affiliations":[{"raw_affiliation_string":"Physical Sciences, Life Sciences and NERSC Divisions, Lawrence Berkeley National Laboratory, Berkeley, California, 94720","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I4210151627"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 94720, Berkeley, California#TAB#","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056814590","display_name":"Teresa Head\u2010Gordon","orcid":"https://orcid.org/0000-0003-0025-8987"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I4210151627","display_name":"National Energy Research Scientific Computing Center","ror":"https://ror.org/05v3mvq14","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521","https://openalex.org/I4210151627"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Teresa Head-Gordon","raw_affiliation_strings":["Physical Sciences, Life Sciences and NERSC Divisions, Lawrence Berkeley National Laboratory, Berkeley, California, 94720","Lawrence Berkeley National Laboratory, 94720, Berkeley, California#TAB#"],"affiliations":[{"raw_affiliation_string":"Physical Sciences, Life Sciences and NERSC Divisions, Lawrence Berkeley National Laboratory, Berkeley, California, 94720","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I4210151627"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 94720, Berkeley, California#TAB#","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032758186","display_name":"Vincent Lamberti","orcid":"https://orcid.org/0000-0002-6702-8863"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Lamberti","raw_affiliation_strings":["Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002119487","display_name":"Robert B. Schnabel","orcid":"https://orcid.org/0000-0003-1707-0294"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Schnabel","raw_affiliation_strings":["Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado, 80309-0430","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado at Boulder, 80309-0430, Boulder, Colorado#TAB#","institution_ids":["https://openalex.org/I188538660"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5010432535"],"corresponding_institution_ids":["https://openalex.org/I188538660"],"apc_list":{"value":2190,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.1197,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.4758399,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"101","issue":"3","first_page":"497","last_page":"514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cartesian-coordinate-system","display_name":"Cartesian coordinate system","score":0.6126693487167358},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5815325975418091},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5486798882484436},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.47594499588012695},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4484092891216278},{"id":"https://openalex.org/keywords/perturbation","display_name":"Perturbation (astronomy)","score":0.4426962733268738},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42144834995269775},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3879208266735077},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.36238572001457214},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3470645546913147},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16524183750152588},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.13886898756027222}],"concepts":[{"id":"https://openalex.org/C16038011","wikidata":"https://www.wikidata.org/wiki/Q62912","display_name":"Cartesian coordinate system","level":2,"score":0.6126693487167358},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5815325975418091},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5486798882484436},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.47594499588012695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4484092891216278},{"id":"https://openalex.org/C177918212","wikidata":"https://www.wikidata.org/wiki/Q803623","display_name":"Perturbation (astronomy)","level":2,"score":0.4426962733268738},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42144834995269775},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3879208266735077},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.36238572001457214},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3470645546913147},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16524183750152588},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.13886898756027222},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10107-003-0493-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10107-003-0493-4","pdf_url":null,"source":{"id":"https://openalex.org/S193920097","display_name":"Mathematical Programming","issn_l":"0025-5610","issn":["0025-5610","1436-4646"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematical Programming","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W140117499","https://openalex.org/W1484547385","https://openalex.org/W1535631466","https://openalex.org/W1665681818","https://openalex.org/W1856811566","https://openalex.org/W1966863747","https://openalex.org/W1969007008","https://openalex.org/W1983906951","https://openalex.org/W1985435142","https://openalex.org/W1992976319","https://openalex.org/W1996159969","https://openalex.org/W1997548160","https://openalex.org/W2004532042","https://openalex.org/W2014063381","https://openalex.org/W2022015698","https://openalex.org/W2026613436","https://openalex.org/W2028114634","https://openalex.org/W2033703813","https://openalex.org/W2036910129","https://openalex.org/W2040066380","https://openalex.org/W2044122969","https://openalex.org/W2044336609","https://openalex.org/W2048313222","https://openalex.org/W2051434435","https://openalex.org/W2053551362","https://openalex.org/W2053614886","https://openalex.org/W2058883160","https://openalex.org/W2059079931","https://openalex.org/W2060651377","https://openalex.org/W2062081085","https://openalex.org/W2071081882","https://openalex.org/W2073529191","https://openalex.org/W2074738960","https://openalex.org/W2074884575","https://openalex.org/W2089591371","https://openalex.org/W2118250094","https://openalex.org/W2122199548","https://openalex.org/W2140514445","https://openalex.org/W2147905080","https://openalex.org/W2148052773","https://openalex.org/W2150986607","https://openalex.org/W2153187042","https://openalex.org/W2158800284","https://openalex.org/W2162166182","https://openalex.org/W2341540977","https://openalex.org/W2570552333","https://openalex.org/W2996825007","https://openalex.org/W4235000932","https://openalex.org/W4239452276","https://openalex.org/W4245658862"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W2043066834","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W1564749278","https://openalex.org/W2294851134","https://openalex.org/W3215498386"],"abstract_inverted_index":null,"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
