{"id":"https://openalex.org/W12256183","doi":"https://doi.org/10.1007/s100090100058","title":"Executable Petri net models for the analysis of metabolic pathways","display_name":"Executable Petri net models for the analysis of metabolic pathways","publication_year":2001,"publication_date":"2001-09-01","ids":{"openalex":"https://openalex.org/W12256183","doi":"https://doi.org/10.1007/s100090100058","mag":"12256183"},"language":"en","primary_location":{"id":"doi:10.1007/s100090100058","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s100090100058","pdf_url":null,"source":{"id":"https://openalex.org/S122567160","display_name":"International Journal on Software Tools for Technology Transfer","issn_l":"1433-2779","issn":["1433-2779","1433-2787"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Software Tools for Technology Transfer","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072309560","display_name":"Hartmann J. Genrich","orcid":"https://orcid.org/0000-0002-8302-0335"},"institutions":[{"id":"https://openalex.org/I29955533","display_name":"Center for Information Technology","ror":"https://ror.org/03jh5a977","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I29955533"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Hartmann Genrich","raw_affiliation_strings":["GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, , , , , , DE","GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, DE"],"affiliations":[{"raw_affiliation_string":"GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, , , , , , DE","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, DE","institution_ids":["https://openalex.org/I29955533"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027062146","display_name":"Robert K\u00fcffner","orcid":null},"institutions":[{"id":"https://openalex.org/I29955533","display_name":"Center for Information Technology","ror":"https://ror.org/03jh5a977","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I29955533"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Robert K\u00fcffner","raw_affiliation_strings":["GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, , , , , , DE","GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, DE"],"affiliations":[{"raw_affiliation_string":"GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, , , , , , DE","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, DE","institution_ids":["https://openalex.org/I29955533"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110429662","display_name":"Klaus Vo\u00df","orcid":null},"institutions":[{"id":"https://openalex.org/I29955533","display_name":"Center for Information Technology","ror":"https://ror.org/03jh5a977","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I29955533"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Klaus Voss","raw_affiliation_strings":["GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, , , , , , DE","GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, DE"],"affiliations":[{"raw_affiliation_string":"GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, , , , , , DE","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"GMD \u2013 German National Research Center for Information Technology, Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53754 Sankt Augustin, Germany, DE","institution_ids":["https://openalex.org/I29955533"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072309560"],"corresponding_institution_ids":["https://openalex.org/I29955533","https://openalex.org/I4210098248"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":8.6832,"has_fulltext":false,"cited_by_count":121,"citation_normalized_percentile":{"value":0.98150187,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"3","issue":"4","first_page":"394","last_page":"404"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11125","display_name":"Petri Nets in System Modeling","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11125","display_name":"Petri Nets in System Modeling","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.920204758644104},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.9120683073997498},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8102260828018188},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.532869815826416},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.48027706146240234},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.448009729385376},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.44752609729766846},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.41335156559944153},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3366110622882843},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32206690311431885},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.30310294032096863},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2423325777053833},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11215975880622864}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.920204758644104},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.9120683073997498},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8102260828018188},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.532869815826416},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.48027706146240234},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.448009729385376},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.44752609729766846},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.41335156559944153},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3366110622882843},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32206690311431885},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.30310294032096863},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2423325777053833},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11215975880622864},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.0},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s100090100058","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s100090100058","pdf_url":null,"source":{"id":"https://openalex.org/S122567160","display_name":"International Journal on Software Tools for Technology Transfer","issn_l":"1433-2779","issn":["1433-2779","1433-2787"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal on Software Tools for Technology Transfer","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1598675378","https://openalex.org/W1975954590","https://openalex.org/W2047496194","https://openalex.org/W2080065479","https://openalex.org/W2100486049","https://openalex.org/W2174637891","https://openalex.org/W3205783337"],"related_works":["https://openalex.org/W2170405129","https://openalex.org/W12256183","https://openalex.org/W2026046761","https://openalex.org/W2473174893","https://openalex.org/W1778149536","https://openalex.org/W1948419321","https://openalex.org/W1990325313","https://openalex.org/W2073745570","https://openalex.org/W3107163583","https://openalex.org/W2084642400"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
