{"id":"https://openalex.org/W2068421750","doi":"https://doi.org/10.1007/s007780200064","title":"Database indexing for large DNA and protein sequence collections","display_name":"Database indexing for large DNA and protein sequence collections","publication_year":2002,"publication_date":"2002-11-01","ids":{"openalex":"https://openalex.org/W2068421750","doi":"https://doi.org/10.1007/s007780200064","mag":"2068421750"},"language":"en","primary_location":{"id":"doi:10.1007/s007780200064","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s007780200064","pdf_url":null,"source":{"id":"https://openalex.org/S78926909","display_name":"The VLDB Journal","issn_l":"0949-877X","issn":["0949-877X","1066-8888"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The VLDB Journal The International Journal on Very Large Data Bases","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041951277","display_name":"Ela Hunt","orcid":"https://orcid.org/0000-0001-7379-847X"},"institutions":[{"id":"https://openalex.org/I2799517710","display_name":"Mineral Products Association","ror":"https://ror.org/047fp1735","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2799517710"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ela Hunt","raw_affiliation_strings":["Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK; e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK","e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK; e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","institution_ids":["https://openalex.org/I2799517710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105832928","display_name":"Malcolm P. Atkinson","orcid":null},"institutions":[{"id":"https://openalex.org/I2799517710","display_name":"Mineral Products Association","ror":"https://ror.org/047fp1735","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2799517710"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Malcolm P. Atkinson","raw_affiliation_strings":["Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK; e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK","e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK; e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","institution_ids":["https://openalex.org/I2799517710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030437633","display_name":"Robert W. Irving","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I2799517710","display_name":"Mineral Products Association","ror":"https://ror.org/047fp1735","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2799517710"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert W. Irving","raw_affiliation_strings":["Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK; e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK","e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK; e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Department of Computing Science, University of Glasgow, Glasgow, G12 8QQ, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"e-mail: {ela,mpa,rwi}@dcs.gla.ac.uk\n, , , , , , GB","institution_ids":["https://openalex.org/I2799517710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5041951277"],"corresponding_institution_ids":["https://openalex.org/I2799517710","https://openalex.org/I7882870"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":4.6876,"has_fulltext":false,"cited_by_count":65,"citation_normalized_percentile":{"value":0.95119779,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"3","first_page":"256","last_page":"271"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.9280564785003662},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7352905869483948},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7309212684631348},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.6862612366676331},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6860480308532715},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.6727005243301392},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.6689178347587585},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.6638815402984619},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.6343070864677429},{"id":"https://openalex.org/keywords/database-index","display_name":"Database index","score":0.560396671295166},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5054659843444824},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.503929078578949},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.4847273826599121},{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.4824960231781006},{"id":"https://openalex.org/keywords/approximate-string-matching","display_name":"Approximate string matching","score":0.45956188440322876},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4552357494831085},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.44395753741264343},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4395657479763031},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.43466633558273315},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4224206507205963},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.38912755250930786},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.31847333908081055},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2653352618217468},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2155258059501648},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19514629244804382},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09364616870880127},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08389264345169067},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07523497939109802},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07291483879089355}],"concepts":[{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.9280564785003662},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7352905869483948},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7309212684631348},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.6862612366676331},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6860480308532715},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.6727005243301392},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.6689178347587585},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.6638815402984619},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.6343070864677429},{"id":"https://openalex.org/C59276292","wikidata":"https://www.wikidata.org/wiki/Q580427","display_name":"Database index","level":3,"score":0.560396671295166},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5054659843444824},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.503929078578949},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.4847273826599121},{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.4824960231781006},{"id":"https://openalex.org/C32610155","wikidata":"https://www.wikidata.org/wiki/Q1798621","display_name":"Approximate string matching","level":3,"score":0.45956188440322876},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4552357494831085},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.44395753741264343},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4395657479763031},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.43466633558273315},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4224206507205963},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.38912755250930786},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.31847333908081055},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2653352618217468},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2155258059501648},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19514629244804382},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09364616870880127},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08389264345169067},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07523497939109802},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07291483879089355},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s007780200064","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s007780200064","pdf_url":null,"source":{"id":"https://openalex.org/S78926909","display_name":"The VLDB Journal","issn_l":"0949-877X","issn":["0949-877X","1066-8888"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The VLDB Journal The International Journal on Very Large Data Bases","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.10.8563","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.10.8563","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.di.uoa.gr/~pms510/matkinson.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.163.8718","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.163.8718","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.dcs.gla.ac.uk/publications/PAPERS//6471/vldb064.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W8187158","https://openalex.org/W16499258","https://openalex.org/W22160234","https://openalex.org/W24821994","https://openalex.org/W159319308","https://openalex.org/W1480892195","https://openalex.org/W1484435918","https://openalex.org/W1487918609","https://openalex.org/W1490430289","https://openalex.org/W1501129459","https://openalex.org/W1501676606","https://openalex.org/W1509727978","https://openalex.org/W1518822993","https://openalex.org/W1537053245","https://openalex.org/W1552601514","https://openalex.org/W1557257771","https://openalex.org/W1592890020","https://openalex.org/W1595313252","https://openalex.org/W1601718731","https://openalex.org/W1608371561","https://openalex.org/W1694705699","https://openalex.org/W1714821586","https://openalex.org/W1834151548","https://openalex.org/W1978294273","https://openalex.org/W1981409766","https://openalex.org/W1990061958","https://openalex.org/W2001496424","https://openalex.org/W2015292449","https://openalex.org/W2028445324","https://openalex.org/W2030839740","https://openalex.org/W2030962049","https://openalex.org/W2033625795","https://openalex.org/W2035281110","https://openalex.org/W2035524445","https://openalex.org/W2035869352","https://openalex.org/W2043481183","https://openalex.org/W2049652268","https://openalex.org/W2054282408","https://openalex.org/W2055043387","https://openalex.org/W2059513841","https://openalex.org/W2064709208","https://openalex.org/W2087064593","https://openalex.org/W2087721273","https://openalex.org/W2103014446","https://openalex.org/W2107908910","https://openalex.org/W2115772919","https://openalex.org/W2116628377","https://openalex.org/W2121252285","https://openalex.org/W2126873530","https://openalex.org/W2127230663","https://openalex.org/W2134616089","https://openalex.org/W2143210482","https://openalex.org/W2152331922","https://openalex.org/W2154528871","https://openalex.org/W2158322625","https://openalex.org/W2158714788","https://openalex.org/W2158874082","https://openalex.org/W2160484851","https://openalex.org/W2162114340","https://openalex.org/W2162481186","https://openalex.org/W2167007782","https://openalex.org/W2168459716","https://openalex.org/W2297165308","https://openalex.org/W2481521039","https://openalex.org/W2533248932","https://openalex.org/W2621280964","https://openalex.org/W2752885492","https://openalex.org/W3000431003","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2082932857","https://openalex.org/W2408769612","https://openalex.org/W3089043377","https://openalex.org/W1807007002","https://openalex.org/W2124852384","https://openalex.org/W2099422674","https://openalex.org/W2114699799","https://openalex.org/W4383749413","https://openalex.org/W2068421750","https://openalex.org/W3082895222"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
