{"id":"https://openalex.org/W4411099432","doi":"https://doi.org/10.1007/s00521-025-11349-5","title":"Hash-binding: DNA-protein binding prediction using hashing-based embedding","display_name":"Hash-binding: DNA-protein binding prediction using hashing-based embedding","publication_year":2025,"publication_date":"2025-06-06","ids":{"openalex":"https://openalex.org/W4411099432","doi":"https://doi.org/10.1007/s00521-025-11349-5"},"language":"en","primary_location":{"id":"doi:10.1007/s00521-025-11349-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00521-025-11349-5","pdf_url":null,"source":{"id":"https://openalex.org/S147897268","display_name":"Neural Computing and Applications","issn_l":"0941-0643","issn":["0941-0643","1433-3058"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural Computing and Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064858842","display_name":"Sarwan Ali","orcid":"https://orcid.org/0000-0001-8121-2168"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sarwan Ali","raw_affiliation_strings":["Department of Neurology, Columbia University, New York, USA"],"raw_orcid":"https://orcid.org/0000-0001-8121-2168","affiliations":[{"raw_affiliation_string":"Department of Neurology, Columbia University, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026459918","display_name":"Tamkanat E. Ali","orcid":"https://orcid.org/0009-0006-7744-4488"},"institutions":[{"id":"https://openalex.org/I207789805","display_name":"Lahore University of Management Sciences","ror":"https://ror.org/05b5x4a35","country_code":"PK","type":"education","lineage":["https://openalex.org/I207789805"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Tamkanat E. Ali","raw_affiliation_strings":["Department of Computer Science, Lahore University of Management Sciences (LUMS), Lahore, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Lahore University of Management Sciences (LUMS), Lahore, Pakistan","institution_ids":["https://openalex.org/I207789805"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026228482","display_name":"Murray Patterson","orcid":"https://orcid.org/0000-0002-4329-0234"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Murray Patterson","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, 30302, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, 30302, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5064858842"],"corresponding_institution_ids":["https://openalex.org/I78577930"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07787675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":"21","first_page":"16905","last_page":"16940"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.7165675759315491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6564408540725708},{"id":"https://openalex.org/keywords/computational-science-and-engineering","display_name":"Computational Science and Engineering","score":0.5653709173202515},{"id":"https://openalex.org/keywords/feature-hashing","display_name":"Feature hashing","score":0.503070056438446},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.47007519006729126},{"id":"https://openalex.org/keywords/locality-sensitive-hashing","display_name":"Locality-sensitive hashing","score":0.44648128747940063},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3477088510990143},{"id":"https://openalex.org/keywords/hash-table","display_name":"Hash table","score":0.33495962619781494},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3238264322280884},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29146692156791687},{"id":"https://openalex.org/keywords/double-hashing","display_name":"Double hashing","score":0.2825736403465271},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.27895429730415344},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.112232506275177}],"concepts":[{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.7165675759315491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6564408540725708},{"id":"https://openalex.org/C68597687","wikidata":"https://www.wikidata.org/wiki/Q362601","display_name":"Computational Science and Engineering","level":2,"score":0.5653709173202515},{"id":"https://openalex.org/C133667856","wikidata":"https://www.wikidata.org/wiki/Q5439682","display_name":"Feature hashing","level":5,"score":0.503070056438446},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.47007519006729126},{"id":"https://openalex.org/C74270461","wikidata":"https://www.wikidata.org/wiki/Q1625299","display_name":"Locality-sensitive hashing","level":4,"score":0.44648128747940063},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3477088510990143},{"id":"https://openalex.org/C67388219","wikidata":"https://www.wikidata.org/wiki/Q207440","display_name":"Hash table","level":3,"score":0.33495962619781494},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3238264322280884},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29146692156791687},{"id":"https://openalex.org/C138111711","wikidata":"https://www.wikidata.org/wiki/Q478351","display_name":"Double hashing","level":4,"score":0.2825736403465271},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.27895429730415344},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.112232506275177}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s00521-025-11349-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00521-025-11349-5","pdf_url":null,"source":{"id":"https://openalex.org/S147897268","display_name":"Neural Computing and Applications","issn_l":"0941-0643","issn":["0941-0643","1433-3058"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural Computing and Applications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1491553314","https://openalex.org/W1496604422","https://openalex.org/W1501531009","https://openalex.org/W1504401263","https://openalex.org/W1990002727","https://openalex.org/W1992116297","https://openalex.org/W2009470087","https://openalex.org/W2061293154","https://openalex.org/W2068922715","https://openalex.org/W2103505761","https://openalex.org/W2119780058","https://openalex.org/W2128533758","https://openalex.org/W2141149420","https://openalex.org/W2152116196","https://openalex.org/W2155559837","https://openalex.org/W2161973008","https://openalex.org/W2166162901","https://openalex.org/W2173801226","https://openalex.org/W2557383173","https://openalex.org/W2770645414","https://openalex.org/W2786738307","https://openalex.org/W2801361050","https://openalex.org/W2951433247","https://openalex.org/W2964338186","https://openalex.org/W2981109304","https://openalex.org/W2995514860","https://openalex.org/W3005235420","https://openalex.org/W3011574394","https://openalex.org/W3087224093","https://openalex.org/W3088409176","https://openalex.org/W3101509328","https://openalex.org/W3148521828","https://openalex.org/W3157397027","https://openalex.org/W3171125843","https://openalex.org/W3184324824","https://openalex.org/W3198971816","https://openalex.org/W3209798985","https://openalex.org/W3217516687","https://openalex.org/W4220693339","https://openalex.org/W4281742771","https://openalex.org/W4295759516","https://openalex.org/W4327550249","https://openalex.org/W4402987810","https://openalex.org/W6699241838"],"related_works":["https://openalex.org/W2135779989","https://openalex.org/W4381744218","https://openalex.org/W2144265691","https://openalex.org/W2059244188","https://openalex.org/W2035647105","https://openalex.org/W1998749283","https://openalex.org/W1554555624","https://openalex.org/W2158169729","https://openalex.org/W2000284985","https://openalex.org/W2086731314"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
