{"id":"https://openalex.org/W4376305378","doi":"https://doi.org/10.1007/s00453-026-01371-x","title":"Bipartite Independent Set Reconfiguration: General and RNA-Inspired Parameterized Algorithms","display_name":"Bipartite Independent Set Reconfiguration: General and RNA-Inspired Parameterized Algorithms","publication_year":2026,"publication_date":"2026-03-05","ids":{"openalex":"https://openalex.org/W4376305378","doi":"https://doi.org/10.1007/s00453-026-01371-x"},"language":"en","primary_location":{"id":"doi:10.1007/s00453-026-01371-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-026-01371-x","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-04094405/document","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091932207","display_name":"Th\u00e9o Boury","orcid":"https://orcid.org/0009-0004-0553-4789"},"institutions":[{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Th\u00e9o Boury","raw_affiliation_strings":["ENS Lyon, Lyon, France","LIX, Ecole Polytechnique, Palaiseau, France","AMIBIO - Algorithms and Models for Integrative BIOlogy (Laboratoire d'Informatique de l'\u00c9cole polytechnique\r\nRoute de Saclay\r\n91128 Palaiseau CEDEX - France)","LaCIM - Laboratoire de combinatoire et d'informatique math\u00e9matique [Montr\u00e9al] (LaCIM Pavillon Pr\u00e9sident-Kennedy 201, Pr\u00e9sident-Kennedy, 4\u00e8me \u00e9tage Montr\u00e9al (Qu\u00e9bec) H2X 3Y7 - Adresse postale : CP 8888, Succ. Centre-ville Montr\u00e9al (Qu\u00e9bec) H3C 3P8 - Canada)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ENS Lyon, Lyon, France","institution_ids":["https://openalex.org/I113428412"]},{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, France","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"]},{"raw_affiliation_string":"AMIBIO - Algorithms and Models for Integrative BIOlogy (Laboratoire d'Informatique de l'\u00c9cole polytechnique\r\nRoute de Saclay\r\n91128 Palaiseau CEDEX - France)","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"]},{"raw_affiliation_string":"LaCIM - Laboratoire de combinatoire et d'informatique math\u00e9matique [Montr\u00e9al] (LaCIM Pavillon Pr\u00e9sident-Kennedy 201, Pr\u00e9sident-Kennedy, 4\u00e8me \u00e9tage Montr\u00e9al (Qu\u00e9bec) H2X 3Y7 - Adresse postale : CP 8888, Succ. Centre-ville Montr\u00e9al (Qu\u00e9bec) H3C 3P8 - Canada)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017247640","display_name":"Laurent Bulteau","orcid":"https://orcid.org/0000-0003-1645-9345"},"institutions":[{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Bulteau","raw_affiliation_strings":["LIGM, Universit\u00e9 Gustave Eiffel, Marne-la-vall\u00e9e, France","LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 Gustave Eiffel, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIGM, Universit\u00e9 Gustave Eiffel, Marne-la-vall\u00e9e, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]},{"raw_affiliation_string":"LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 Gustave Eiffel, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014123931","display_name":"Bertrand Marchand","orcid":"https://orcid.org/0000-0001-8060-6640"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bertrand Marchand","raw_affiliation_strings":["LIGM, Universit\u00e9 Gustave Eiffel, Marne-la-vall\u00e9e, France","LIX, Ecole Polytechnique, Palaiseau, France","AMIBIO - Algorithms and Models for Integrative BIOlogy (Laboratoire d'Informatique de l'\u00c9cole polytechnique\r\nRoute de Saclay\r\n91128 Palaiseau CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIGM, Universit\u00e9 Gustave Eiffel, Marne-la-vall\u00e9e, France","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]},{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, France","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"]},{"raw_affiliation_string":"AMIBIO - Algorithms and Models for Integrative BIOlogy (Laboratoire d'Informatique de l'\u00c9cole polytechnique\r\nRoute de Saclay\r\n91128 Palaiseau CEDEX - France)","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076325273","display_name":"Yann Ponty","orcid":"https://orcid.org/0000-0002-7615-3930"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Yann Ponty","raw_affiliation_strings":["LIX, Ecole Polytechnique, Palaiseau, France","AMIBIO - Algorithms and Models for Integrative BIOlogy (Laboratoire d'Informatique de l'\u00c9cole polytechnique\r\nRoute de Saclay\r\n91128 Palaiseau CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, France","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"]},{"raw_affiliation_string":"AMIBIO - Algorithms and Models for Integrative BIOlogy (Laboratoire d'Informatique de l'\u00c9cole polytechnique\r\nRoute de Saclay\r\n91128 Palaiseau CEDEX - France)","institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076325273"],"corresponding_institution_ids":["https://openalex.org/I142476485","https://openalex.org/I4210139461"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00043763,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"88","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9447000026702881,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.831969141960144},{"id":"https://openalex.org/keywords/control-reconfiguration","display_name":"Control reconfiguration","score":0.8072748184204102},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5763053894042969},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5518959164619446},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5306640863418579},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34808745980262756},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09491559863090515},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.06615707278251648}],"concepts":[{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.831969141960144},{"id":"https://openalex.org/C119701452","wikidata":"https://www.wikidata.org/wiki/Q5165881","display_name":"Control reconfiguration","level":2,"score":0.8072748184204102},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5763053894042969},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5518959164619446},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5306640863418579},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34808745980262756},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09491559863090515},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.06615707278251648}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s00453-026-01371-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-026-01371-x","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-04094405v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04094405","pdf_url":"https://hal.science/hal-04094405/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2023","raw_type":"info:eu-repo/semantics/preprint"},{"id":"pmh:oai:HAL:hal-04094405v2","is_oa":true,"landing_page_url":"https://hal.science/hal-04094405v2/document","pdf_url":"https://hal.science/hal-04094405v2/file/RNA_barriers_submission.pdf","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithmica, 2026","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-04094405v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04094405","pdf_url":"https://hal.science/hal-04094405/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2023","raw_type":"info:eu-repo/semantics/preprint"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8225726433","display_name":"Deciphering Complex RNA structures by probing and interactions","funder_award_id":"ANR-19-CE45-0023","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4376305378.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W2899024477","https://openalex.org/W3008568895","https://openalex.org/W1513274608","https://openalex.org/W2795775903","https://openalex.org/W2978392541","https://openalex.org/W4401352220","https://openalex.org/W2093152025","https://openalex.org/W1988884185","https://openalex.org/W44682325","https://openalex.org/W4386880093","https://openalex.org/W2951298881","https://openalex.org/W4230754714","https://openalex.org/W2962888077","https://openalex.org/W75009678","https://openalex.org/W1520583984","https://openalex.org/W2914414140","https://openalex.org/W1995612793","https://openalex.org/W2001307989","https://openalex.org/W2007266273","https://openalex.org/W2618108760","https://openalex.org/W3129184720","https://openalex.org/W1976676758","https://openalex.org/W1989886714","https://openalex.org/W2286129431","https://openalex.org/W3006501763","https://openalex.org/W2344397418","https://openalex.org/W135557522","https://openalex.org/W135876007","https://openalex.org/W1514759861","https://openalex.org/W2038646777","https://openalex.org/W2095266486","https://openalex.org/W2037479769","https://openalex.org/W4240416043","https://openalex.org/W1984675364","https://openalex.org/W2164061693","https://openalex.org/W3093937951","https://openalex.org/W1524617288","https://openalex.org/W2538002713","https://openalex.org/W2004945910"],"related_works":["https://openalex.org/W2051058708","https://openalex.org/W2357657342","https://openalex.org/W154868527","https://openalex.org/W1494268238","https://openalex.org/W1516574938","https://openalex.org/W1983207144","https://openalex.org/W2952056231","https://openalex.org/W2481000617","https://openalex.org/W2914625303","https://openalex.org/W2053685668"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2023-05-13T00:00:00"}
