{"id":"https://openalex.org/W2043107521","doi":"https://doi.org/10.1007/s00453-007-9008-7","title":"Algorithm Engineering for Color-Coding with Applications to Signaling Pathway Detection","display_name":"Algorithm Engineering for Color-Coding with Applications to Signaling Pathway Detection","publication_year":2007,"publication_date":"2007-09-21","ids":{"openalex":"https://openalex.org/W2043107521","doi":"https://doi.org/10.1007/s00453-007-9008-7","mag":"2043107521"},"language":"en","primary_location":{"id":"doi:10.1007/s00453-007-9008-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-007-9008-7","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063644073","display_name":"Falk H\u00fcffner","orcid":"https://orcid.org/0000-0003-0017-1881"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Falk H\u00fcffner","raw_affiliation_strings":["Institut f\u00fcr Informatik, Friedrich-Schiller-Universit\u00e4t Jena, Ernst-Abbe-Platz 2, 07743, Jena, Germany","Friedrich-Schiller-Universit\u00e4t Jena, Institut f\u00fcr Informatik, Ernst-Abbe-Platz 2, 07743, Jena, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Friedrich-Schiller-Universit\u00e4t Jena, Ernst-Abbe-Platz 2, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Friedrich-Schiller-Universit\u00e4t Jena, Institut f\u00fcr Informatik, Ernst-Abbe-Platz 2, 07743, Jena, Germany#TAB#","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037551711","display_name":"Sebastian Wernicke","orcid":"https://orcid.org/0000-0003-0799-2412"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sebastian Wernicke","raw_affiliation_strings":["Institut f\u00fcr Informatik, Friedrich-Schiller-Universit\u00e4t Jena, Ernst-Abbe-Platz 2, 07743, Jena, Germany","Friedrich-Schiller-Universit\u00e4t Jena, Institut f\u00fcr Informatik, Ernst-Abbe-Platz 2, 07743, Jena, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Friedrich-Schiller-Universit\u00e4t Jena, Ernst-Abbe-Platz 2, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Friedrich-Schiller-Universit\u00e4t Jena, Institut f\u00fcr Informatik, Ernst-Abbe-Platz 2, 07743, Jena, Germany#TAB#","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060182416","display_name":"Thomas Zichner","orcid":"https://orcid.org/0000-0001-9848-7598"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Zichner","raw_affiliation_strings":["Institut f\u00fcr Informatik, Friedrich-Schiller-Universit\u00e4t Jena, Ernst-Abbe-Platz 2, 07743, Jena, Germany","Friedrich-Schiller-Universit\u00e4t Jena, Institut f\u00fcr Informatik, Ernst-Abbe-Platz 2, 07743, Jena, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Friedrich-Schiller-Universit\u00e4t Jena, Ernst-Abbe-Platz 2, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Friedrich-Schiller-Universit\u00e4t Jena, Institut f\u00fcr Informatik, Ernst-Abbe-Platz 2, 07743, Jena, Germany#TAB#","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5063644073"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.8066,"has_fulltext":false,"cited_by_count":68,"citation_normalized_percentile":{"value":0.70913874,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"52","issue":"2","first_page":"114","last_page":"132"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/color-coding","display_name":"Color-coding","score":0.8865631818771362},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.6978393793106079},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.686199426651001},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5767452120780945},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5371333956718445},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.5071742534637451},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4419098496437073},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25007253885269165},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22512286901474}],"concepts":[{"id":"https://openalex.org/C104597421","wikidata":"https://www.wikidata.org/wiki/Q5148529","display_name":"Color-coding","level":2,"score":0.8865631818771362},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6978393793106079},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.686199426651001},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5767452120780945},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5371333956718445},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.5071742534637451},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4419098496437073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25007253885269165},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22512286901474},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s00453-007-9008-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-007-9008-7","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.68.9469","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.68.9469","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://theinf1.informatik.uni-jena.de/publications/color-coding-algorithmica07.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W48165703","https://openalex.org/W1487173148","https://openalex.org/W1494208392","https://openalex.org/W1517036688","https://openalex.org/W1586904125","https://openalex.org/W1812837484","https://openalex.org/W1966893452","https://openalex.org/W1967041330","https://openalex.org/W1969186119","https://openalex.org/W1970828859","https://openalex.org/W1976157781","https://openalex.org/W1984249061","https://openalex.org/W2003652380","https://openalex.org/W2031332216","https://openalex.org/W2034011726","https://openalex.org/W2051064851","https://openalex.org/W2066904980","https://openalex.org/W2079301493","https://openalex.org/W2101177721","https://openalex.org/W2104009289","https://openalex.org/W2104315543","https://openalex.org/W2112454884","https://openalex.org/W2128203754","https://openalex.org/W2130349559","https://openalex.org/W2131532450","https://openalex.org/W2133034893","https://openalex.org/W2152550583","https://openalex.org/W2168846334","https://openalex.org/W2291489045","https://openalex.org/W2296148711","https://openalex.org/W2561675875","https://openalex.org/W3019365222","https://openalex.org/W3145128584","https://openalex.org/W3188069612","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W17698779","https://openalex.org/W143348934","https://openalex.org/W2170081145","https://openalex.org/W2610440445","https://openalex.org/W2108101990","https://openalex.org/W4236673163","https://openalex.org/W2094822553","https://openalex.org/W2039343069","https://openalex.org/W2170728496","https://openalex.org/W2160491079"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
