{"id":"https://openalex.org/W2071784518","doi":"https://doi.org/10.1007/s00453-007-0178-0","title":"Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins","display_name":"Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins","publication_year":2007,"publication_date":"2007-07-13","ids":{"openalex":"https://openalex.org/W2071784518","doi":"https://doi.org/10.1007/s00453-007-0178-0","mag":"2071784518"},"language":"en","primary_location":{"id":"doi:10.1007/s00453-007-0178-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-007-0178-0","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044722808","display_name":"Amarda Shehu","orcid":"https://orcid.org/0000-0001-5230-4610"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amarda Shehu","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX 77005, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX 77005, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061903235","display_name":"Cecilia Clementi","orcid":"https://orcid.org/0000-0001-9221-2358"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cecilia Clementi","raw_affiliation_strings":["Department of Chemistry, Rice University, Houston, TX 77005, USA","Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Rice University, Houston, TX 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I181547552"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067205988","display_name":"Lydia E. Kavraki","orcid":"https://orcid.org/0000-0003-0699-8038"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lydia E. Kavraki","raw_affiliation_strings":["Department of Bioengineering, Rice University, Houston, TX 77005, USA","Department of Computer Science, Rice University, Houston, TX 77005, USA","Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Rice University, Houston, TX 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX 77005, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044722808","https://openalex.org/A5061903235","https://openalex.org/A5067205988"],"corresponding_institution_ids":["https://openalex.org/I181547552","https://openalex.org/I74775410"],"apc_list":{"value":3290,"currency":"USD","value_usd":3290},"apc_paid":null,"fwci":0.7626,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.69649679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"48","issue":"4","first_page":"303","last_page":"327"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.7390488386154175},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5806309580802917},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5727731585502625},{"id":"https://openalex.org/keywords/boltzmann-constant","display_name":"Boltzmann constant","score":0.5628746747970581},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.5242900252342224},{"id":"https://openalex.org/keywords/statistical-mechanics","display_name":"Statistical mechanics","score":0.46304184198379517},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4387718141078949},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.41912779211997986},{"id":"https://openalex.org/keywords/statistical-fluctuations","display_name":"Statistical fluctuations","score":0.4143028259277344},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24903467297554016},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23353475332260132},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.20930248498916626},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.12140887975692749},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.07911008596420288},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.07572609186172485}],"concepts":[{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.7390488386154175},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5806309580802917},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5727731585502625},{"id":"https://openalex.org/C35304006","wikidata":"https://www.wikidata.org/wiki/Q5962","display_name":"Boltzmann constant","level":2,"score":0.5628746747970581},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.5242900252342224},{"id":"https://openalex.org/C99874945","wikidata":"https://www.wikidata.org/wiki/Q188715","display_name":"Statistical mechanics","level":2,"score":0.46304184198379517},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4387718141078949},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.41912779211997986},{"id":"https://openalex.org/C64258800","wikidata":"https://www.wikidata.org/wiki/Q7604395","display_name":"Statistical fluctuations","level":2,"score":0.4143028259277344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24903467297554016},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23353475332260132},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.20930248498916626},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.12140887975692749},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.07911008596420288},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.07572609186172485},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s00453-007-0178-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-007-0178-0","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.434.8609","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.434.8609","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.kavrakilab.org/sites/default/files/shehu2007samplingConf_0.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.699999988079071,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":96,"referenced_works":["https://openalex.org/W1480928214","https://openalex.org/W1509476036","https://openalex.org/W1530704185","https://openalex.org/W1531791809","https://openalex.org/W1653812874","https://openalex.org/W1658649599","https://openalex.org/W1820924839","https://openalex.org/W1965800930","https://openalex.org/W1973363841","https://openalex.org/W1974225312","https://openalex.org/W1975205107","https://openalex.org/W1977969550","https://openalex.org/W1978159078","https://openalex.org/W1980045457","https://openalex.org/W1984753840","https://openalex.org/W1986466512","https://openalex.org/W1986859143","https://openalex.org/W1986880224","https://openalex.org/W1993177346","https://openalex.org/W1993999483","https://openalex.org/W1997507624","https://openalex.org/W1999198659","https://openalex.org/W1999621555","https://openalex.org/W2002195659","https://openalex.org/W2003331005","https://openalex.org/W2005581828","https://openalex.org/W2006253061","https://openalex.org/W2007626550","https://openalex.org/W2012364120","https://openalex.org/W2013145865","https://openalex.org/W2015110061","https://openalex.org/W2018562664","https://openalex.org/W2019476648","https://openalex.org/W2027739701","https://openalex.org/W2029087609","https://openalex.org/W2029667189","https://openalex.org/W2039425860","https://openalex.org/W2046799939","https://openalex.org/W2054221206","https://openalex.org/W2056760934","https://openalex.org/W2058206198","https://openalex.org/W2062393760","https://openalex.org/W2062691475","https://openalex.org/W2067484689","https://openalex.org/W2069126311","https://openalex.org/W2070379981","https://openalex.org/W2071556057","https://openalex.org/W2072832294","https://openalex.org/W2079944814","https://openalex.org/W2080736062","https://openalex.org/W2083669917","https://openalex.org/W2083995470","https://openalex.org/W2084692421","https://openalex.org/W2089597488","https://openalex.org/W2093547815","https://openalex.org/W2093869301","https://openalex.org/W2096506888","https://openalex.org/W2103734924","https://openalex.org/W2103842182","https://openalex.org/W2110333200","https://openalex.org/W2112154906","https://openalex.org/W2112959255","https://openalex.org/W2116275717","https://openalex.org/W2116901406","https://openalex.org/W2122199548","https://openalex.org/W2124373168","https://openalex.org/W2126162505","https://openalex.org/W2127221680","https://openalex.org/W2128990851","https://openalex.org/W2130479394","https://openalex.org/W2131578092","https://openalex.org/W2133537805","https://openalex.org/W2137604324","https://openalex.org/W2144288821","https://openalex.org/W2144729032","https://openalex.org/W2145180780","https://openalex.org/W2146097584","https://openalex.org/W2146895524","https://openalex.org/W2148812183","https://openalex.org/W2149186423","https://openalex.org/W2149478651","https://openalex.org/W2149989728","https://openalex.org/W2154297157","https://openalex.org/W2155503286","https://openalex.org/W2157052713","https://openalex.org/W2162166182","https://openalex.org/W2162828800","https://openalex.org/W2163426622","https://openalex.org/W2166110558","https://openalex.org/W2166739931","https://openalex.org/W2167040291","https://openalex.org/W2167801161","https://openalex.org/W2522932733","https://openalex.org/W2922792548","https://openalex.org/W3086983054","https://openalex.org/W3104163644"],"related_works":["https://openalex.org/W2494523064","https://openalex.org/W2943623134","https://openalex.org/W2588219639","https://openalex.org/W2030292806","https://openalex.org/W2215759665","https://openalex.org/W2960358116","https://openalex.org/W3041172967","https://openalex.org/W2749065928","https://openalex.org/W2056123813","https://openalex.org/W1535031934"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
