{"id":"https://openalex.org/W1975508873","doi":"https://doi.org/10.1007/s00453-006-1207-0","title":"A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences through Alignment","display_name":"A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences through Alignment","publication_year":2006,"publication_date":"2006-08-18","ids":{"openalex":"https://openalex.org/W1975508873","doi":"https://doi.org/10.1007/s00453-006-1207-0","mag":"1975508873"},"language":"en","primary_location":{"id":"doi:10.1007/s00453-006-1207-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-006-1207-0","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060626918","display_name":"Jesper Jansson","orcid":"https://orcid.org/0000-0001-6859-8932"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Jesper Jansson","raw_affiliation_strings":["Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090171111","display_name":"See-Kiong Ng","orcid":"https://orcid.org/0000-0001-6565-7511"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"See-Kiong Ng","raw_affiliation_strings":["Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore"],"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Wing-Kin Sung","raw_affiliation_strings":["Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore","Genome Institute of Singapore, Genome #02-01, 60 Biopolis Street, Singapore 138672, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Genome Institute of Singapore, Genome #02-01, 60 Biopolis Street, Singapore 138672, Singapore","institution_ids":["https://openalex.org/I66068411"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031948300","display_name":"Willy Hugo","orcid":"https://orcid.org/0000-0002-1426-7190"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Hugo Willy","raw_affiliation_strings":["Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5012563463","https://openalex.org/A5031948300","https://openalex.org/A5060626918","https://openalex.org/A5090171111"],"corresponding_institution_ids":["https://openalex.org/I165932596","https://openalex.org/I3005327000","https://openalex.org/I66068411"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.2709,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56000361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"46","issue":"2","first_page":"223","last_page":"245"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arc","display_name":"Arc (geometry)","score":0.7339126467704773},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7004271745681763},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6292276382446289},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6123350262641907},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.5038017630577087},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.48906928300857544},{"id":"https://openalex.org/keywords/substructure","display_name":"Substructure","score":0.46484440565109253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.428536057472229},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.41539159417152405},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.37156298756599426},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14799028635025024},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12284418940544128},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10174909234046936}],"concepts":[{"id":"https://openalex.org/C83415579","wikidata":"https://www.wikidata.org/wiki/Q161973","display_name":"Arc (geometry)","level":2,"score":0.7339126467704773},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7004271745681763},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6292276382446289},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6123350262641907},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.5038017630577087},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.48906928300857544},{"id":"https://openalex.org/C99679407","wikidata":"https://www.wikidata.org/wiki/Q56761637","display_name":"Substructure","level":2,"score":0.46484440565109253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.428536057472229},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.41539159417152405},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37156298756599426},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14799028635025024},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12284418940544128},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10174909234046936},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s00453-006-1207-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00453-006-1207-0","pdf_url":null,"source":{"id":"https://openalex.org/S89324355","display_name":"Algorithmica","issn_l":"0178-4617","issn":["0178-4617","1432-0541"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithmica","raw_type":"journal-article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/39453","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/39453","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W155288729","https://openalex.org/W165213868","https://openalex.org/W1511188453","https://openalex.org/W1513047926","https://openalex.org/W1537127938","https://openalex.org/W1570126464","https://openalex.org/W1574721051","https://openalex.org/W1600401233","https://openalex.org/W1902180264","https://openalex.org/W1971988254","https://openalex.org/W1993968482","https://openalex.org/W2000191287","https://openalex.org/W2025763720","https://openalex.org/W2028639276","https://openalex.org/W2067194564","https://openalex.org/W2079307253","https://openalex.org/W2099650196","https://openalex.org/W2125498037","https://openalex.org/W2136740638","https://openalex.org/W2140213100","https://openalex.org/W2145353175","https://openalex.org/W2162744351","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3153444835","https://openalex.org/W2153916713","https://openalex.org/W2023846184","https://openalex.org/W2703419385","https://openalex.org/W2329056228","https://openalex.org/W2284584236","https://openalex.org/W1979083399","https://openalex.org/W2374530195","https://openalex.org/W2005965064","https://openalex.org/W1973015798"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
