{"id":"https://openalex.org/W7122364948","doi":"https://doi.org/10.1007/s00354-025-00315-3","title":"VGO: COVID-19 Virus Genomics Ontology for Semantic Annotation and Querying of Genome Sequence Data","display_name":"VGO: COVID-19 Virus Genomics Ontology for Semantic Annotation and Querying of Genome Sequence Data","publication_year":2026,"publication_date":"2026-01-12","ids":{"openalex":"https://openalex.org/W7122364948","doi":"https://doi.org/10.1007/s00354-025-00315-3"},"language":"en","primary_location":{"id":"doi:10.1007/s00354-025-00315-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00354-025-00315-3","pdf_url":null,"source":{"id":"https://openalex.org/S165364243","display_name":"New Generation Computing","issn_l":"0288-3635","issn":["0288-3635","1882-7055"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Generation Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083617695","display_name":"D J Bain","orcid":"https://orcid.org/0000-0002-2811-6692"},"institutions":[{"id":"https://openalex.org/I106542073","display_name":"University of Calcutta","ror":"https://ror.org/01e7v7w47","country_code":"IN","type":"education","lineage":["https://openalex.org/I106542073"]},{"id":"https://openalex.org/I6498739","display_name":"Indian Statistical Institute","ror":"https://ror.org/00q2w1j53","country_code":"IN","type":"education","lineage":["https://openalex.org/I6498739"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Debanjali Bain","raw_affiliation_strings":["Department of Library and Information Science, Calcutta University, 87/1, College St, College Square, Kolkata, West Bengal, 700073, India","Department of Library and Information Science, Calcutta University, Kolkata, India","Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India","Documentation Research and Training Centre, Indian Statistical Institute, Bangalore, India"],"raw_orcid":"https://orcid.org/0000-0002-2811-6692","affiliations":[{"raw_affiliation_string":"Department of Library and Information Science, Calcutta University, 87/1, College St, College Square, Kolkata, West Bengal, 700073, India","institution_ids":["https://openalex.org/I106542073"]},{"raw_affiliation_string":"Department of Library and Information Science, Calcutta University, Kolkata, India","institution_ids":["https://openalex.org/I106542073"]},{"raw_affiliation_string":"Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India","institution_ids":["https://openalex.org/I6498739"]},{"raw_affiliation_string":"Documentation Research and Training Centre, Indian Statistical Institute, Bangalore, India","institution_ids":["https://openalex.org/I6498739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030223469","display_name":"Biswanath Dutta","orcid":"https://orcid.org/0000-0003-3059-8202"},"institutions":[{"id":"https://openalex.org/I6498739","display_name":"Indian Statistical Institute","ror":"https://ror.org/00q2w1j53","country_code":"IN","type":"education","lineage":["https://openalex.org/I6498739"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Biswanath Dutta","raw_affiliation_strings":["Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India","Documentation Research and Training Centre, Indian Statistical Institute, Bangalore, India"],"raw_orcid":"https://orcid.org/0000-0003-3059-8202","affiliations":[{"raw_affiliation_string":"Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India","institution_ids":["https://openalex.org/I6498739"]},{"raw_affiliation_string":"Documentation Research and Training Centre, Indian Statistical Institute, Bangalore, India","institution_ids":["https://openalex.org/I6498739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030223469","https://openalex.org/A5083617695"],"corresponding_institution_ids":["https://openalex.org/I106542073","https://openalex.org/I6498739"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0347565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"44","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5824999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5824999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1793999969959259,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.10010000318288803,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7389000058174133},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5300999879837036},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.46709999442100525},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4408000111579895},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4390000104904175},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4239000082015991},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4171000123023987},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.38580000400543213},{"id":"https://openalex.org/keywords/soundness","display_name":"Soundness","score":0.36970001459121704}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8162000179290771},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7389000058174133},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5300999879837036},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47920000553131104},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.46709999442100525},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4449000060558319},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4408000111579895},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4390000104904175},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4239000082015991},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4171000123023987},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.38580000400543213},{"id":"https://openalex.org/C39920170","wikidata":"https://www.wikidata.org/wiki/Q693083","display_name":"Soundness","level":2,"score":0.36970001459121704},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.3662000000476837},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.362199991941452},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3400000035762787},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.33230000734329224},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.32359999418258667},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.302700012922287},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.30250000953674316},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.299699991941452},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.2985000014305115},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.2793999910354614},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.27869999408721924},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.27619999647140503},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.27320000529289246},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.26460000872612},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.26100000739097595},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.2590000033378601}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s00354-025-00315-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00354-025-00315-3","pdf_url":null,"source":{"id":"https://openalex.org/S165364243","display_name":"New Generation Computing","issn_l":"0288-3635","issn":["0288-3635","1882-7055"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Generation Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47117745876312256,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W50022627","https://openalex.org/W273489581","https://openalex.org/W1811783050","https://openalex.org/W1993210385","https://openalex.org/W2080205798","https://openalex.org/W2103017472","https://openalex.org/W2104474203","https://openalex.org/W2108882871","https://openalex.org/W2141615601","https://openalex.org/W2146136779","https://openalex.org/W2155249637","https://openalex.org/W2165666845","https://openalex.org/W2170064161","https://openalex.org/W2544098428","https://openalex.org/W2612033696","https://openalex.org/W2767318416","https://openalex.org/W2903358327","https://openalex.org/W2951580378","https://openalex.org/W2951635356","https://openalex.org/W3012320055","https://openalex.org/W3035434194","https://openalex.org/W3081980945","https://openalex.org/W3089592695","https://openalex.org/W3135768530","https://openalex.org/W3138966307","https://openalex.org/W3152451364","https://openalex.org/W3165479483","https://openalex.org/W3169630668","https://openalex.org/W3172860375","https://openalex.org/W3174449879","https://openalex.org/W3185521398","https://openalex.org/W3188154233","https://openalex.org/W3189064364","https://openalex.org/W3195582114","https://openalex.org/W3203727037","https://openalex.org/W3206756402","https://openalex.org/W3217300869","https://openalex.org/W4200137031","https://openalex.org/W4212857232","https://openalex.org/W4213331558","https://openalex.org/W4225843190","https://openalex.org/W4229036877","https://openalex.org/W4253164610","https://openalex.org/W4283391528","https://openalex.org/W4289524524","https://openalex.org/W4290878889","https://openalex.org/W4293213763","https://openalex.org/W4295250342","https://openalex.org/W4306980360","https://openalex.org/W4320496557","https://openalex.org/W4321611257","https://openalex.org/W4366978932","https://openalex.org/W4367317402","https://openalex.org/W4386986150","https://openalex.org/W4401129427","https://openalex.org/W4410140496"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2026-01-13T00:00:00"}
