{"id":"https://openalex.org/W7122364948","doi":"https://doi.org/10.1007/s00354-025-00315-3","title":"VGO: COVID-19 Virus Genomics Ontology for Semantic Annotation and Querying of Genome Sequence Data","display_name":"VGO: COVID-19 Virus Genomics Ontology for Semantic Annotation and Querying of Genome Sequence Data","publication_year":2026,"publication_date":"2026-01-12","ids":{"openalex":"https://openalex.org/W7122364948","doi":"https://doi.org/10.1007/s00354-025-00315-3"},"language":"en","primary_location":{"id":"doi:10.1007/s00354-025-00315-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00354-025-00315-3","pdf_url":null,"source":{"id":"https://openalex.org/S165364243","display_name":"New Generation Computing","issn_l":"0288-3635","issn":["0288-3635","1882-7055"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Generation Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083617695","display_name":"D J Bain","orcid":"https://orcid.org/0000-0002-2811-6692"},"institutions":[{"id":"https://openalex.org/I106542073","display_name":"University of Calcutta","ror":"https://ror.org/01e7v7w47","country_code":"IN","type":"education","lineage":["https://openalex.org/I106542073"]},{"id":"https://openalex.org/I6498739","display_name":"Indian Statistical Institute","ror":"https://ror.org/00q2w1j53","country_code":"IN","type":"education","lineage":["https://openalex.org/I6498739"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Debanjali Bain","raw_affiliation_strings":["Department of Library and Information Science, Calcutta University, 87/1, College St, College Square, Kolkata, West Bengal, 700073, India","Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India"],"raw_orcid":"https://orcid.org/0000-0002-2811-6692","affiliations":[{"raw_affiliation_string":"Department of Library and Information Science, Calcutta University, 87/1, College St, College Square, Kolkata, West Bengal, 700073, India","institution_ids":["https://openalex.org/I106542073"]},{"raw_affiliation_string":"Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India","institution_ids":["https://openalex.org/I6498739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030223469","display_name":"Biswanath Dutta","orcid":"https://orcid.org/0000-0003-3059-8202"},"institutions":[{"id":"https://openalex.org/I6498739","display_name":"Indian Statistical Institute","ror":"https://ror.org/00q2w1j53","country_code":"IN","type":"education","lineage":["https://openalex.org/I6498739"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Biswanath Dutta","raw_affiliation_strings":["Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India"],"raw_orcid":"https://orcid.org/0000-0003-3059-8202","affiliations":[{"raw_affiliation_string":"Documentation Research and Training Centre, Indian Statistical Institute, 8th Mile Mysore Road, Bangalore, Karnataka, 560059, India","institution_ids":["https://openalex.org/I6498739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5083617695"],"corresponding_institution_ids":["https://openalex.org/I106542073","https://openalex.org/I6498739"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06216093,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"44","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5824999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5824999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1793999969959259,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.10010000318288803,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7389000058174133},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5300999879837036},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.46709999442100525},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4408000111579895},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4390000104904175},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4239000082015991},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4171000123023987},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.38580000400543213},{"id":"https://openalex.org/keywords/soundness","display_name":"Soundness","score":0.36970001459121704}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8162000179290771},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7389000058174133},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5300999879837036},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47920000553131104},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.46709999442100525},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4449000060558319},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4408000111579895},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4390000104904175},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4239000082015991},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4171000123023987},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.38580000400543213},{"id":"https://openalex.org/C39920170","wikidata":"https://www.wikidata.org/wiki/Q693083","display_name":"Soundness","level":2,"score":0.36970001459121704},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.3662000000476837},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.362199991941452},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3400000035762787},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.33230000734329224},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.32359999418258667},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.302700012922287},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.30250000953674316},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.299699991941452},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.2985000014305115},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.2793999910354614},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.27869999408721924},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.27619999647140503},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.27320000529289246},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.26460000872612},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.26100000739097595},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.2590000033378601}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s00354-025-00315-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00354-025-00315-3","pdf_url":null,"source":{"id":"https://openalex.org/S165364243","display_name":"New Generation Computing","issn_l":"0288-3635","issn":["0288-3635","1882-7055"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Generation Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47117745876312256,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W50022627","https://openalex.org/W273489581","https://openalex.org/W1811783050","https://openalex.org/W1993210385","https://openalex.org/W2080205798","https://openalex.org/W2103017472","https://openalex.org/W2104474203","https://openalex.org/W2108882871","https://openalex.org/W2141615601","https://openalex.org/W2146136779","https://openalex.org/W2155249637","https://openalex.org/W2165666845","https://openalex.org/W2170064161","https://openalex.org/W2544098428","https://openalex.org/W2612033696","https://openalex.org/W2767318416","https://openalex.org/W2903358327","https://openalex.org/W2951580378","https://openalex.org/W2951635356","https://openalex.org/W3012320055","https://openalex.org/W3035434194","https://openalex.org/W3081980945","https://openalex.org/W3089592695","https://openalex.org/W3135768530","https://openalex.org/W3138966307","https://openalex.org/W3152451364","https://openalex.org/W3165479483","https://openalex.org/W3169630668","https://openalex.org/W3172860375","https://openalex.org/W3174449879","https://openalex.org/W3185521398","https://openalex.org/W3188154233","https://openalex.org/W3189064364","https://openalex.org/W3195582114","https://openalex.org/W3203727037","https://openalex.org/W3206756402","https://openalex.org/W3217300869","https://openalex.org/W4200137031","https://openalex.org/W4212857232","https://openalex.org/W4213331558","https://openalex.org/W4225843190","https://openalex.org/W4229036877","https://openalex.org/W4253164610","https://openalex.org/W4283391528","https://openalex.org/W4289524524","https://openalex.org/W4290878889","https://openalex.org/W4293213763","https://openalex.org/W4295250342","https://openalex.org/W4306980360","https://openalex.org/W4320496557","https://openalex.org/W4321611257","https://openalex.org/W4366978932","https://openalex.org/W4367317402","https://openalex.org/W4386986150","https://openalex.org/W4401129427","https://openalex.org/W4410140496"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-14T00:41:55.809242","created_date":"2026-01-13T00:00:00"}
