{"id":"https://openalex.org/W3012082713","doi":"https://doi.org/10.1007/s00354-020-00089-w","title":"Designing Dynamical Molecular Systems with the PEN Toolbox","display_name":"Designing Dynamical Molecular Systems with the PEN Toolbox","publication_year":2020,"publication_date":"2020-03-19","ids":{"openalex":"https://openalex.org/W3012082713","doi":"https://doi.org/10.1007/s00354-020-00089-w","mag":"3012082713"},"language":"en","primary_location":{"id":"doi:10.1007/s00354-020-00089-w","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00354-020-00089-w","pdf_url":null,"source":{"id":"https://openalex.org/S165364243","display_name":"New Generation Computing","issn_l":"0288-3635","issn":["0288-3635","1882-7055"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Generation Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002767684","display_name":"Nathana\u00ebl Aubert-Kato","orcid":"https://orcid.org/0000-0002-9100-1855"},"institutions":[{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Nathanael Aubert-Kato","raw_affiliation_strings":["Department of Information Sciences, Ochanomizu University, Tokyo, Japan"],"raw_orcid":"https://orcid.org/0000-0002-9100-1855","affiliations":[{"raw_affiliation_string":"Department of Information Sciences, Ochanomizu University, Tokyo, Japan","institution_ids":["https://openalex.org/I26120043"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022001331","display_name":"L\u00e9o Cazenille","orcid":"https://orcid.org/0000-0002-5893-9761"},"institutions":[{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Leo Cazenille","raw_affiliation_strings":["Department of Information Sciences, Ochanomizu University, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Sciences, Ochanomizu University, Tokyo, Japan","institution_ids":["https://openalex.org/I26120043"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002767684"],"corresponding_institution_ids":["https://openalex.org/I26120043"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":0.6782,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.79605701,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"38","issue":"2","first_page":"341","last_page":"366"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10913","display_name":"Molecular Junctions and Nanostructures","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.9075760841369629},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.8523632287979126},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.35738593339920044},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.32796987891197205},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.28907567262649536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.9075760841369629},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.8523632287979126},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.35738593339920044},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.32796987891197205},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28907567262649536}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s00354-020-00089-w","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s00354-020-00089-w","pdf_url":null,"source":{"id":"https://openalex.org/S165364243","display_name":"New Generation Computing","issn_l":"0288-3635","issn":["0288-3635","1882-7055"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Generation Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G356973495","display_name":null,"funder_award_id":"JP19KK0261","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W60114985","https://openalex.org/W102487131","https://openalex.org/W758372786","https://openalex.org/W1609149460","https://openalex.org/W1629051378","https://openalex.org/W1964850787","https://openalex.org/W1975963879","https://openalex.org/W1984067306","https://openalex.org/W1986292487","https://openalex.org/W2000700701","https://openalex.org/W2001887200","https://openalex.org/W2008626444","https://openalex.org/W2013533966","https://openalex.org/W2027546131","https://openalex.org/W2030775133","https://openalex.org/W2049311792","https://openalex.org/W2075031385","https://openalex.org/W2099915788","https://openalex.org/W2105178132","https://openalex.org/W2108903561","https://openalex.org/W2111935653","https://openalex.org/W2118706537","https://openalex.org/W2126105956","https://openalex.org/W2127826644","https://openalex.org/W2133035852","https://openalex.org/W2137772471","https://openalex.org/W2141478443","https://openalex.org/W2141724420","https://openalex.org/W2144713064","https://openalex.org/W2147449010","https://openalex.org/W2147450793","https://openalex.org/W2150249752","https://openalex.org/W2152459070","https://openalex.org/W2163906985","https://openalex.org/W2186150695","https://openalex.org/W2186876778","https://openalex.org/W2198098822","https://openalex.org/W2292501494","https://openalex.org/W2324786322","https://openalex.org/W2462548332","https://openalex.org/W2472238586","https://openalex.org/W2553504735","https://openalex.org/W2580381179","https://openalex.org/W2582963816","https://openalex.org/W2594014878","https://openalex.org/W2729519488","https://openalex.org/W2745393282","https://openalex.org/W2765985933","https://openalex.org/W2795517941","https://openalex.org/W2810268565","https://openalex.org/W2883417007","https://openalex.org/W2887258823","https://openalex.org/W2899225483","https://openalex.org/W2951637073","https://openalex.org/W2952620388","https://openalex.org/W2983067746","https://openalex.org/W3006877510","https://openalex.org/W4243676002","https://openalex.org/W4252292900"],"related_works":["https://openalex.org/W4293148923","https://openalex.org/W2046186274","https://openalex.org/W1482275438","https://openalex.org/W1767730754","https://openalex.org/W2353433747","https://openalex.org/W1614816533","https://openalex.org/W2324601427","https://openalex.org/W2100081852","https://openalex.org/W2050432237","https://openalex.org/W4248910437"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
