{"id":"https://openalex.org/W2061843313","doi":"https://doi.org/10.1007/bf02944781","title":"An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences","display_name":"An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W2061843313","doi":"https://doi.org/10.1007/bf02944781","mag":"2061843313"},"language":"en","primary_location":{"id":"doi:10.1007/bf02944781","is_oa":false,"landing_page_url":"https://doi.org/10.1007/bf02944781","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067492946","display_name":"Giulio Pavesi","orcid":"https://orcid.org/0000-0001-5705-6249"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Giulio Pavesi","raw_affiliation_strings":["Department of Computer Science, Systems and Communication, University of Milan-Bicocca, Via Bicocca degli Arcimboldi 8, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Systems and Communication, University of Milan-Bicocca, Via Bicocca degli Arcimboldi 8, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073163964","display_name":"Giancarlo Mauri","orcid":"https://orcid.org/0000-0003-3520-4022"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giancarlo Mauri","raw_affiliation_strings":["Department of Computer Science, Systems and Communication, University of Milan-Bicocca, Via Bicocca degli Arcimboldi 8, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Systems and Communication, University of Milan-Bicocca, Via Bicocca degli Arcimboldi 8, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Department of Biomolecular Science and Biotechnology, University of Milan, Milan, Italy","Department of Biomolecular Science and Biotechnology, University of Milan, Milan, Italy;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomolecular Science and Biotechnology, University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Department of Biomolecular Science and Biotechnology, University of Milan, Milan, Italy;","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5067492946"],"corresponding_institution_ids":["https://openalex.org/I189158943"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":0.3401,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56061498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":"1","first_page":"2","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5657413601875305},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5596111416816711},{"id":"https://openalex.org/keywords/pseudoknot","display_name":"Pseudoknot","score":0.5563430786132812},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5374242663383484},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5363377928733826},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5199021697044373},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5149286985397339},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5017435550689697},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4935518503189087},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.47580868005752563},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.4558523893356323},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.43668609857559204},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.42192092537879944},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.4174134135246277},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.41613703966140747},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.413967102766037},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28990599513053894},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27321404218673706},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2530486583709717},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24973446130752563},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2063470482826233},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10514193773269653}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5657413601875305},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5596111416816711},{"id":"https://openalex.org/C105130999","wikidata":"https://www.wikidata.org/wiki/Q414976","display_name":"Pseudoknot","level":4,"score":0.5563430786132812},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5374242663383484},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5363377928733826},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5199021697044373},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5149286985397339},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5017435550689697},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4935518503189087},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.47580868005752563},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.4558523893356323},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.43668609857559204},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.42192092537879944},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.4174134135246277},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.41613703966140747},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.413967102766037},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28990599513053894},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27321404218673706},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2530486583709717},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24973446130752563},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2063470482826233},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10514193773269653},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/bf02944781","is_oa":false,"landing_page_url":"https://doi.org/10.1007/bf02944781","pdf_url":null,"source":{"id":"https://openalex.org/S161516442","display_name":"Journal of Computer Science and Technology","issn_l":"1000-9000","issn":["1000-9000","1860-4749"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer Science and Technology","raw_type":"journal-article"},{"id":"pmh:oai:boa.unimib.it:10281/2477","is_oa":false,"landing_page_url":"http://hdl.handle.net/10281/2477","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ricerca.uniba.it:11586/23059","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/23059","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W569835445","https://openalex.org/W938539187","https://openalex.org/W1510634286","https://openalex.org/W1519185585","https://openalex.org/W1530664063","https://openalex.org/W1543796220","https://openalex.org/W1877068375","https://openalex.org/W1990061958","https://openalex.org/W2003787247","https://openalex.org/W2003967338","https://openalex.org/W2008908262","https://openalex.org/W2009818318","https://openalex.org/W2028703398","https://openalex.org/W2039244411","https://openalex.org/W2043020016","https://openalex.org/W2044595289","https://openalex.org/W2068725534","https://openalex.org/W2074231493","https://openalex.org/W2080427769","https://openalex.org/W2088938573","https://openalex.org/W2096718668","https://openalex.org/W2099359200","https://openalex.org/W2099819774","https://openalex.org/W2100537111","https://openalex.org/W2105070391","https://openalex.org/W2107908910","https://openalex.org/W2110455321","https://openalex.org/W2131459517","https://openalex.org/W2137356209","https://openalex.org/W2139270299","https://openalex.org/W2139298143","https://openalex.org/W2140651796","https://openalex.org/W2146077306","https://openalex.org/W2153923207","https://openalex.org/W2155544170","https://openalex.org/W2161381662","https://openalex.org/W2161749252","https://openalex.org/W2166567740","https://openalex.org/W3145676374","https://openalex.org/W4230981326","https://openalex.org/W4238098545"],"related_works":["https://openalex.org/W2084367350","https://openalex.org/W2547795274","https://openalex.org/W2026882519","https://openalex.org/W2436901547","https://openalex.org/W2613371097","https://openalex.org/W1974126272","https://openalex.org/W120580227","https://openalex.org/W2950806586","https://openalex.org/W2220384852","https://openalex.org/W2132653593"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2016-06-24T00:00:00"}
