{"id":"https://openalex.org/W2025330303","doi":"https://doi.org/10.1007/bf02481322","title":"Integrative modeling of gene expression and metabolism with E-CELL System","display_name":"Integrative modeling of gene expression and metabolism with E-CELL System","publication_year":2002,"publication_date":"2002-09-01","ids":{"openalex":"https://openalex.org/W2025330303","doi":"https://doi.org/10.1007/bf02481322","mag":"2025330303"},"language":"en","primary_location":{"id":"doi:10.1007/bf02481322","is_oa":false,"landing_page_url":"https://doi.org/10.1007/bf02481322","pdf_url":null,"source":{"id":"https://openalex.org/S104439334","display_name":"Artificial Life and Robotics","issn_l":"1433-5298","issn":["1433-5298","1614-7456"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life and Robotics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108772445","display_name":"Kenta Hashimoto","orcid":"https://orcid.org/0009-0000-8147-1987"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kenta Hashimoto","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085134928","display_name":"Sae Seno","orcid":null},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Sae Seno","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079955221","display_name":"Pawan K. Dhar","orcid":null},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Pawan Kumar Dhar","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015575713","display_name":"Masaru Tomita","orcid":"https://orcid.org/0000-0003-3423-377X"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaru Tomita","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, 997-0035, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan","institution_ids":["https://openalex.org/I203951103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5108772445"],"corresponding_institution_ids":["https://openalex.org/I203951103"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.1138,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.46476167,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":"3","first_page":"99","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9641000032424927,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9596999883651733,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6416212320327759},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.6112895011901855},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.518193781375885},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.486567884683609},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48372724652290344},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.45732274651527405},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.4428033232688904},{"id":"https://openalex.org/keywords/cell-metabolism","display_name":"Cell metabolism","score":0.43247249722480774},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.38378340005874634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2698063254356384},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15918993949890137},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.13156628608703613}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6416212320327759},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.6112895011901855},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.518193781375885},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.486567884683609},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48372724652290344},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.45732274651527405},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.4428033232688904},{"id":"https://openalex.org/C2991704936","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Cell metabolism","level":3,"score":0.43247249722480774},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.38378340005874634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2698063254356384},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15918993949890137},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.13156628608703613},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/bf02481322","is_oa":false,"landing_page_url":"https://doi.org/10.1007/bf02481322","pdf_url":null,"source":{"id":"https://openalex.org/S104439334","display_name":"Artificial Life and Robotics","issn_l":"1433-5298","issn":["1433-5298","1614-7456"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Life and Robotics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2013236503","https://openalex.org/W2027865251","https://openalex.org/W2041652393","https://openalex.org/W2086598392","https://openalex.org/W2099269203","https://openalex.org/W2131067724"],"related_works":["https://openalex.org/W1608194938","https://openalex.org/W2366107444","https://openalex.org/W2572774164","https://openalex.org/W4388145910","https://openalex.org/W2111346700","https://openalex.org/W2090900888","https://openalex.org/W1541592150","https://openalex.org/W2381570729","https://openalex.org/W1976205134","https://openalex.org/W4248336175"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
