{"id":"https://openalex.org/W4387425078","doi":"https://doi.org/10.1007/978-981-99-7074-2_5","title":"Reconciling Inconsistent Molecular Structures from\u00a0Biochemical Databases","display_name":"Reconciling Inconsistent Molecular Structures from\u00a0Biochemical Databases","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4387425078","doi":"https://doi.org/10.1007/978-981-99-7074-2_5"},"language":"en","primary_location":{"id":"doi:10.1007/978-981-99-7074-2_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-99-7074-2_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://findresearcher.sdu.dk/ws/files/250914795/structuretool-isbra-paper.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102791490","display_name":"Casper Asbj\u00f8rn Eriksen","orcid":"https://orcid.org/0000-0003-0474-9468"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Casper Asbj\u00f8rn Eriksen","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001028353","display_name":"Jakob L. Andersen","orcid":"https://orcid.org/0000-0002-4165-3732"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jakob Lykke Andersen","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021765002","display_name":"Rolf Fagerberg","orcid":"https://orcid.org/0000-0003-1004-3314"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Rolf Fagerberg","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078883427","display_name":"Daniel Merkle","orcid":"https://orcid.org/0000-0001-7792-375X"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Daniel Merkle","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102791490"],"corresponding_institution_ids":["https://openalex.org/I177969490"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.9771,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.86908547,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"58","last_page":"71"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.8612349629402161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7986522912979126},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.7069457173347473},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5245528221130371},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.516463041305542},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.49421361088752747},{"id":"https://openalex.org/keywords/database-theory","display_name":"Database theory","score":0.45265689492225647},{"id":"https://openalex.org/keywords/chemical-database","display_name":"Chemical database","score":0.44888415932655334},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.4440712630748749},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44049370288848877},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.4248931407928467},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41466251015663147},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3793575167655945},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2858456075191498},{"id":"https://openalex.org/keywords/database-design","display_name":"Database design","score":0.2695739269256592},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1778601109981537},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07680267095565796}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.8612349629402161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7986522912979126},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7069457173347473},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5245528221130371},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.516463041305542},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.49421361088752747},{"id":"https://openalex.org/C12439846","wikidata":"https://www.wikidata.org/wiki/Q4809258","display_name":"Database theory","level":3,"score":0.45265689492225647},{"id":"https://openalex.org/C203394866","wikidata":"https://www.wikidata.org/wiki/Q2881060","display_name":"Chemical database","level":2,"score":0.44888415932655334},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.4440712630748749},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44049370288848877},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.4248931407928467},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41466251015663147},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3793575167655945},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2858456075191498},{"id":"https://openalex.org/C148840519","wikidata":"https://www.wikidata.org/wiki/Q1049878","display_name":"Database design","level":2,"score":0.2695739269256592},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1778601109981537},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07680267095565796},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-981-99-7074-2_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-99-7074-2_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:sdu.dk:openaire_cris_publications/ed768b5e-ad6c-4587-a40d-339043d459da","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/ed768b5e-ad6c-4587-a40d-339043d459da","pdf_url":"https://findresearcher.sdu.dk/ws/files/250914795/structuretool-isbra-paper.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eriksen, C A, Andersen, J L, Fagerberg, R & Merkle, D 2023, Reconciling Inconsistent Molecular Structures from\u00a0Biochemical Databases. in X Guo, S Mangul, M Patterson & A Zelikovsky (eds), Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Springer Science+Business Media, Lecture Notes in Computer Science, vol. 14248, pp. 58-71, 19th International Symposium on Bioinformatics Research and Applications, ISBRA 2023, Wroclaw, Poland, 09/10/2023. https://doi.org/10.1007/978-981-99-7074-2_5","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:sdu.dk:openaire_cris_publications/ed768b5e-ad6c-4587-a40d-339043d459da","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/ed768b5e-ad6c-4587-a40d-339043d459da","pdf_url":"https://findresearcher.sdu.dk/ws/files/250914795/structuretool-isbra-paper.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eriksen, C A, Andersen, J L, Fagerberg, R & Merkle, D 2023, Reconciling Inconsistent Molecular Structures from\u00a0Biochemical Databases. in X Guo, S Mangul, M Patterson & A Zelikovsky (eds), Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Springer Science+Business Media, Lecture Notes in Computer Science, vol. 14248, pp. 58-71, 19th International Symposium on Bioinformatics Research and Applications, ISBRA 2023, Wroclaw, Poland, 09/10/2023. https://doi.org/10.1007/978-981-99-7074-2_5","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1032663478","display_name":null,"funder_award_id":"NNF19OC0057834","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G2222438795","display_name":null,"funder_award_id":"0066551","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G2942398999","display_name":null,"funder_award_id":"NNF21OC0066551","funder_id":"https://openalex.org/F4320322436","funder_display_name":"Novo Nordisk"},{"id":"https://openalex.org/G3843702472","display_name":null,"funder_award_id":"NNF21OC0066551","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"}],"funders":[{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387425078.pdf","grobid_xml":"https://content.openalex.org/works/W4387425078.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1508604947","https://openalex.org/W1975147762","https://openalex.org/W1983464445","https://openalex.org/W1984678368","https://openalex.org/W1999638776","https://openalex.org/W2033377040","https://openalex.org/W2038702914","https://openalex.org/W2041610798","https://openalex.org/W2057069496","https://openalex.org/W2066636486","https://openalex.org/W2071104230","https://openalex.org/W2074399857","https://openalex.org/W2097186436","https://openalex.org/W2122709242","https://openalex.org/W2139138803","https://openalex.org/W2159511040","https://openalex.org/W2165373392","https://openalex.org/W2202347610","https://openalex.org/W2431109715","https://openalex.org/W2559588208","https://openalex.org/W2566157169","https://openalex.org/W2642913700","https://openalex.org/W4307468223"],"related_works":["https://openalex.org/W2413568490","https://openalex.org/W1913624564","https://openalex.org/W3130054399","https://openalex.org/W4301062032","https://openalex.org/W2319837024","https://openalex.org/W2343500026","https://openalex.org/W2390627310","https://openalex.org/W2413664130","https://openalex.org/W2051731675","https://openalex.org/W2608983118"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
