{"id":"https://openalex.org/W4400519583","doi":"https://doi.org/10.1007/978-981-97-5087-0_5","title":"A Data Set of Paired Structural Segments Between Protein Data Bank and AlphaFold DB for Medium-Resolution Cryo-EM Density Maps: A Gap in Overall Structural Quality","display_name":"A Data Set of Paired Structural Segments Between Protein Data Bank and AlphaFold DB for Medium-Resolution Cryo-EM Density Maps: A Gap in Overall Structural Quality","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4400519583","doi":"https://doi.org/10.1007/978-981-97-5087-0_5","pmid":"https://pubmed.ncbi.nlm.nih.gov/41509633"},"language":"en","primary_location":{"id":"doi:10.1007/978-981-97-5087-0_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-97-5087-0_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12774667/pdf/nihms-2132116.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100612153","display_name":"Thu Ha Nguyen","orcid":"https://orcid.org/0009-0004-3436-4360"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thu Nguyen","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA 23529, USA"],"raw_orcid":"https://orcid.org/0009-0004-3436-4360","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA 23529, USA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010993930","display_name":"Willy Wriggers","orcid":"https://orcid.org/0000-0001-5326-3152"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Willy Wriggers","raw_affiliation_strings":["Department of Mechanical and Aerospace Engineering, Old Dominion University, Norfolk, VA 23529, USA"],"raw_orcid":"https://orcid.org/0000-0001-5326-3152","affiliations":[{"raw_affiliation_string":"Department of Mechanical and Aerospace Engineering, Old Dominion University, Norfolk, VA 23529, USA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049641499","display_name":"Jing He","orcid":"https://orcid.org/0000-0002-7249-4746"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jing He","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA 23529, USA"],"raw_orcid":"https://orcid.org/0000-0002-7249-4746","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA 23529, USA","institution_ids":["https://openalex.org/I81365321"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049641499"],"corresponding_institution_ids":["https://openalex.org/I81365321"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.5455,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.94505495,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"14956","issue":null,"first_page":"52","last_page":"63"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7427208423614502},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.6462766528129578},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.6290171146392822},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5660974979400635},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.46773561835289},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.423542320728302},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3693506121635437},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3361641764640808},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33543843030929565},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1309860646724701},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.09409722685813904},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.08966735005378723},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06600964069366455}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7427208423614502},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.6462766528129578},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.6290171146392822},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5660974979400635},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.46773561835289},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.423542320728302},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3693506121635437},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3361641764640808},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33543843030929565},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1309860646724701},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.09409722685813904},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.08966735005378723},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06600964069366455},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-981-97-5087-0_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-97-5087-0_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmid:41509633","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41509633","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics research and applications : ... international symposium, ISBRA ... proceedings. ISBRA (Conference)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12774667","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12774667/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12774667/pdf/nihms-2132116.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinform Res Appl","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12774667","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12774667/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12774667/pdf/nihms-2132116.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinform Res Appl","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5933034863","display_name":null,"funder_award_id":"R01-GM062968","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400519583.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W2051925784","https://openalex.org/W2110483430","https://openalex.org/W2113267464","https://openalex.org/W2130479394","https://openalex.org/W2140673705","https://openalex.org/W2154714625","https://openalex.org/W2158996088","https://openalex.org/W2765322245","https://openalex.org/W2900674118","https://openalex.org/W2973457155","https://openalex.org/W3083406432","https://openalex.org/W3094051077","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3198923619","https://openalex.org/W3203459683","https://openalex.org/W3211795435","https://openalex.org/W4281291878","https://openalex.org/W4283790249","https://openalex.org/W4300861364","https://openalex.org/W4300861393","https://openalex.org/W4309506674","https://openalex.org/W4323309784","https://openalex.org/W4375948752","https://openalex.org/W4388934329"],"related_works":["https://openalex.org/W1488329660","https://openalex.org/W2557507571","https://openalex.org/W2027108423","https://openalex.org/W1855666948","https://openalex.org/W2758561209","https://openalex.org/W1548095260","https://openalex.org/W2594414941","https://openalex.org/W2781711915","https://openalex.org/W2112817590","https://openalex.org/W1555291398"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
