{"id":"https://openalex.org/W4412807112","doi":"https://doi.org/10.1007/978-981-95-0695-8_31","title":"AlloPED: Leveraging Protein Language Models and Structure Features for Allosteric Site Prediction","display_name":"AlloPED: Leveraging Protein Language Models and Structure Features for Allosteric Site Prediction","publication_year":2025,"publication_date":"2025-07-31","ids":{"openalex":"https://openalex.org/W4412807112","doi":"https://doi.org/10.1007/978-981-95-0695-8_31"},"language":"en","primary_location":{"id":"doi:10.1007/978-981-95-0695-8_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-95-0695-8_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024813997","display_name":"Xiaochuan Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaochuan Chen","raw_affiliation_strings":["College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112394575","display_name":"Jianqiang Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianqiang Zheng","raw_affiliation_strings":["College of Materials and Energy, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Materials and Energy, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103833913","display_name":"Zhenni Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenni Huang","raw_affiliation_strings":["College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066687177","display_name":"Ziqi Xu","orcid":"https://orcid.org/0000-0001-5272-8456"},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziqi Xu","raw_affiliation_strings":["College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031797179","display_name":"J.C. Huang","orcid":"https://orcid.org/0000-0001-6843-3396"},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junye Huang","raw_affiliation_strings":["College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056130583","display_name":"Y. H. Tan","orcid":"https://orcid.org/0009-0006-7851-1611"},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueyi Tan","raw_affiliation_strings":["College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China","Shenzhen Institutes of Advanced Technology, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, Shenzhen, China","institution_ids":["https://openalex.org/I4210145761"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100700892","display_name":"Huiling Zhang","orcid":"https://orcid.org/0000-0002-7856-2703"},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiling Zhang","raw_affiliation_strings":["College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China"],"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information & College of Software Engineering, South China Agricultural University, Guangzhou, 510642, China","institution_ids":["https://openalex.org/I101479585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5024813997"],"corresponding_institution_ids":["https://openalex.org/I101479585"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":6.6694,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.95899274,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"383","last_page":"397"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8485593199729919},{"id":"https://openalex.org/keywords/allosteric-regulation","display_name":"Allosteric regulation","score":0.5686101913452148},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4791930913925171},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39527666568756104},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07642367482185364}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8485593199729919},{"id":"https://openalex.org/C166342909","wikidata":"https://www.wikidata.org/wiki/Q845326","display_name":"Allosteric regulation","level":3,"score":0.5686101913452148},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4791930913925171},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39527666568756104},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07642367482185364},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-981-95-0695-8_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-95-0695-8_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1974093948","https://openalex.org/W2009123297","https://openalex.org/W2046450796","https://openalex.org/W2061463182","https://openalex.org/W2070255110","https://openalex.org/W2116993067","https://openalex.org/W2125299915","https://openalex.org/W2151794181","https://openalex.org/W2154249927","https://openalex.org/W2164088236","https://openalex.org/W2177124199","https://openalex.org/W2254489325","https://openalex.org/W2315972815","https://openalex.org/W2324848479","https://openalex.org/W2414667422","https://openalex.org/W2512708954","https://openalex.org/W2750485376","https://openalex.org/W3046878556","https://openalex.org/W3130442532","https://openalex.org/W3164039183","https://openalex.org/W3177500196","https://openalex.org/W4205773061","https://openalex.org/W4236358448","https://openalex.org/W4285009335","https://openalex.org/W4307180312","https://openalex.org/W4312045153","https://openalex.org/W4320341731","https://openalex.org/W4390563867","https://openalex.org/W4401140013","https://openalex.org/W4402632138","https://openalex.org/W4406002713","https://openalex.org/W4406325023","https://openalex.org/W4406440058","https://openalex.org/W4409916715"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2939998722","https://openalex.org/W2169750653","https://openalex.org/W2195592873","https://openalex.org/W1971782741","https://openalex.org/W3005062988","https://openalex.org/W2075777827","https://openalex.org/W3204019825"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
