{"id":"https://openalex.org/W7169659067","doi":"https://doi.org/10.1007/978-981-92-3397-7_9","title":"BioSurvFormer: Pathway-Aware and Censoring-Aware Cancer Survival Prediction from Gene Expression Data","display_name":"BioSurvFormer: Pathway-Aware and Censoring-Aware Cancer Survival Prediction from Gene Expression Data","publication_year":2026,"publication_date":"2026-07-18","ids":{"openalex":"https://openalex.org/W7169659067","doi":"https://doi.org/10.1007/978-981-92-3397-7_9"},"language":"en","primary_location":{"id":"doi:10.1007/978-981-92-3397-7_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-92-3397-7_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5125059455","display_name":"Z Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihang Chen","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China, 361005"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China, 361005","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5141115098","display_name":"Qinglang Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Qinglang Guo","raw_affiliation_strings":["Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210105136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136498577","display_name":"W Y Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Wei Zhou","raw_affiliation_strings":["Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210105136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101508336","display_name":"Yuehua Chen","orcid":"https://orcid.org/0000-0002-4646-4017"},"institutions":[{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yujun Chen","raw_affiliation_strings":["Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210105136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5141129470","display_name":"Zhaoan Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zhaoan Yang","raw_affiliation_strings":["Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210105136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5141132230","display_name":"Yulong Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yulong Fu","raw_affiliation_strings":["Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210105136"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5141112888","display_name":"Chenxi Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chenxi Huang","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China, 361005"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China, 361005","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5140760677","display_name":"Yunxiang Yang","orcid":"https://orcid.org/0000-0001-6496-3381"},"institutions":[{"id":"https://openalex.org/I4210105136","display_name":"Yangtze River Delta Physics Research Center (China)","ror":"https://ror.org/01g53qc72","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210105136"]},{"id":"https://openalex.org/I4210110242","display_name":"Digital Science (United States)","ror":"https://ror.org/020h4b682","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110242","https://openalex.org/I4210112888","https://openalex.org/I4210118830"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yunxiang Yang","raw_affiliation_strings":["Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Key Laboratory of Digital Finance, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210110242"]},{"raw_affiliation_string":"Yangtze Delta Industrial Innovation Center of Quantum Science and Technology, Suzhou, China, 215133","institution_ids":["https://openalex.org/I4210105136"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5140760677","https://openalex.org/A5141112888"],"corresponding_institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210105136","https://openalex.org/I4210110242"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"98","last_page":"109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.880299985408783},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.5080000162124634},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.4894999861717224},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.40470001101493835},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.383899986743927},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.33899998664855957},{"id":"https://openalex.org/keywords/overall-survival","display_name":"Overall survival","score":0.3345000147819519},{"id":"https://openalex.org/keywords/expression-quantitative-trait-loci","display_name":"Expression quantitative trait loci","score":0.3077999949455261}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.880299985408783},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7301999926567078},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5328999757766724},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.5080000162124634},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.4894999861717224},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4860000014305115},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44200000166893005},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.40470001101493835},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.383899986743927},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34130001068115234},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.33899998664855957},{"id":"https://openalex.org/C3019894029","wikidata":"https://www.wikidata.org/wiki/Q332823","display_name":"Overall survival","level":2,"score":0.3345000147819519},{"id":"https://openalex.org/C168393362","wikidata":"https://www.wikidata.org/wiki/Q5421706","display_name":"Expression quantitative trait loci","level":5,"score":0.3077999949455261},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30390000343322754},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.3019999861717224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30070000886917114},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.28999999165534973},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.2847999930381775},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.2759999930858612},{"id":"https://openalex.org/C2776283816","wikidata":"https://www.wikidata.org/wiki/Q332823","display_name":"Survival rate","level":2,"score":0.26660001277923584},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.2662999927997589},{"id":"https://openalex.org/C3020167199","wikidata":"https://www.wikidata.org/wiki/Q5031455","display_name":"Cancer survival","level":3,"score":0.26440000534057617},{"id":"https://openalex.org/C2991772755","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Gene interaction","level":3,"score":0.2630000114440918},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.25119999051094055},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.25040000677108765}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-981-92-3397-7_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-981-92-3397-7_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1998728654","https://openalex.org/W2150095882","https://openalex.org/W2214074259","https://openalex.org/W2619383789","https://openalex.org/W2767281692","https://openalex.org/W2956228567","https://openalex.org/W2967444033","https://openalex.org/W2996092187","https://openalex.org/W4296693015","https://openalex.org/W4304014045","https://openalex.org/W4313056691","https://openalex.org/W4387211638","https://openalex.org/W4400102178","https://openalex.org/W4414520813","https://openalex.org/W7092364579","https://openalex.org/W7133238715"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-20T05:51:44.042241","created_date":"2026-07-19T00:00:00"}
