{"id":"https://openalex.org/W2964178241","doi":"https://doi.org/10.1007/978-3-662-44753-6_7","title":"Navigating in a sea of repeats in RNA-seq without drowning","display_name":"Navigating in a sea of repeats in RNA-seq without drowning","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2964178241","doi":"https://doi.org/10.1007/978-3-662-44753-6_7","mag":"2964178241"},"language":"en","primary_location":{"id":"pmh:oai:iris.luiss.it:11385/202529","is_oa":false,"landing_page_url":"http://hdl.handle.net/11385/202529","pdf_url":null,"source":{"id":"https://openalex.org/S4377196446","display_name":"IRIS - Institutional Research Information System (Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56441308","host_organization_name":"Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli","host_organization_lineage":["https://openalex.org/I56441308"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},"type":"book-chapter","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111967478","display_name":"Gustavo Sacomoto","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sacomoto G.","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes","Universit\u00e9 Lyon 1","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027309652","display_name":"Blerina Sinaimeri","orcid":"https://orcid.org/0000-0002-9797-7592"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sinaimeri B.","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes","Universit\u00e9 Lyon 1","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048303382","display_name":"Camille Marchet","orcid":"https://orcid.org/0000-0002-7235-7346"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marchet C.","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes","Universit\u00e9 Lyon 1","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035082713","display_name":"Vincent Mi\u00e8le","orcid":"https://orcid.org/0000-0001-7584-0088"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Miele V.","raw_affiliation_strings":["Universit\u00e9 Lyon 1","LBBE - Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558 (43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"LBBE - Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558 (43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sagot M. -F.","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes","Universit\u00e9 Lyon 1","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087487293","display_name":"Vincent Lacroix","orcid":"https://orcid.org/0000-0002-4235-8524"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lacroix V.","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes","Universit\u00e9 Lyon 1","BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"BAMBOO - An algorithmic view on genomes, cells, and environments (Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive. UMR CNRS 5558 Campus de La Doua - Universit\u00e9 Claude Bernard - Lyon 1 B\u00e2timent Gr\u00e9goire Mendel - 16 rue Raphael Dubois 69 100 Villeurbanne -- INRIA Grenoble - Rh\u00f4ne-Alpes Inovall\u00e9e 655 avenue de l'Europe -Montbonnot 38 334 Saint Ismier Cedex France - France)","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1326498283","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Baobab [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.427,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.65496489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.7566817998886108},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6656780242919922},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.6104729771614075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5399389863014221},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4409753680229187},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.43074706196784973},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4304884374141693},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.4284321367740631},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3803851008415222},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.31367963552474976},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27958714962005615},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.2584003806114197},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24134811758995056},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.23194468021392822},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22404351830482483},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18025022745132446},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.17144989967346191}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.7566817998886108},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6656780242919922},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.6104729771614075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5399389863014221},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4409753680229187},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.43074706196784973},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4304884374141693},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.4284321367740631},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3803851008415222},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.31367963552474976},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27958714962005615},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.2584003806114197},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24134811758995056},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.23194468021392822},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22404351830482483},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18025022745132446},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.17144989967346191},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:iris.luiss.it:11385/202529","is_oa":false,"landing_page_url":"http://hdl.handle.net/11385/202529","pdf_url":null,"source":{"id":"https://openalex.org/S4377196446","display_name":"IRIS - Institutional Research Information System (Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56441308","host_organization_name":"Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli","host_organization_lineage":["https://openalex.org/I56441308"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.8500000238418579,"display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1635391495","https://openalex.org/W2031006817","https://openalex.org/W2053057991","https://openalex.org/W2065771268","https://openalex.org/W2070664846","https://openalex.org/W2096237610","https://openalex.org/W2103635790","https://openalex.org/W2112888168","https://openalex.org/W2126419817","https://openalex.org/W2136145671","https://openalex.org/W2156841387","https://openalex.org/W2160607291","https://openalex.org/W2166558929","https://openalex.org/W2166810745","https://openalex.org/W2963037296"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W3125399386","https://openalex.org/W2354744388","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W2756186577","https://openalex.org/W2735897904","https://openalex.org/W1908987670","https://openalex.org/W2025111520"],"abstract_inverted_index":{"The":[0,78],"main":[1,47],"challenge":[2],"in":[3,67,96,118,137,177],"de":[4,55,120],"novo":[5],"assembly":[6,144],"of":[7,39,45,80,108,116,141,145,193,196],"NGS":[8],"data":[9,98],"is":[10,23,128],"certainly":[11],"to":[12,35,74,103,168],"deal":[13,75],"with":[14,76,125],"repeats":[15,66,95],"that":[16,113,136,173],"are":[17,43,52,83,174],"longer":[18],"than":[19],"the":[20,46,114,138,194],"reads.":[21],"This":[22],"particularly":[24],"true":[25],"for":[26,65,91],"RNA-seq":[27,68,97],"data,":[28,69],"since":[29],"coverage":[30],"information":[31],"cannot":[32],"be":[33],"used":[34],"flag":[36],"repeated":[37,178],"sequences,":[38],"which":[40],"transposable":[41],"elements":[42],"one":[44],"examples.":[48],"Most":[49],"transcriptome":[50],"assemblers":[51],"based":[53],"on":[54,72,199],"Bruijn":[56,121],"graphs":[57],"and":[58,62,99,164],"have":[59],"no":[60],"clear":[61],"explicit":[63],"model":[64,90],"relying":[70],"instead":[71],"heuristics":[73],"them.":[77],"results":[79,184],"this":[81,126],"work":[82],"twofold.":[84],"First,":[85],"we":[86,134,154,162,181],"introduce":[87],"a":[88,105,119,123,131,142],"formal":[89],"representing":[92],"high":[93],"copy-number":[94],"exploit":[100],"its":[101],"properties":[102],"infer":[104],"combinatorial":[106,152],"characteristic":[107,127],"repeat-associated":[109],"subgraphs.":[110,159],"We":[111,188],"show":[112,135],"problem":[115],"identifying":[117],"graph":[122],"subgraph":[124],"NP-complete.":[129],"In":[130,160],"second":[132],"step,":[133],"specific":[139],"case":[140],"local":[143],"alternative":[146],"splicing":[147],"(AS)":[148],"events,":[149],"using":[150,185],"our":[151,183,197],"characterization":[153],"can":[155],"implicitly":[156],"avoid":[157],"such":[158],"particular,":[161],"designed":[163],"implemented":[165],"an":[166,191],"algorithm":[167],"efficiently":[169],"identify":[170],"AS":[171],"events":[172],"not":[175],"included":[176],"regions.":[179],"Finally,":[180],"validate":[182],"synthetic":[186],"data.":[187,201],"also":[189],"give":[190],"indication":[192],"usefulness":[195],"method":[198],"real":[200],"\u00a9":[202],"2014":[203],"Springer-Verlag":[204],"Berlin":[205],"Heidelberg.":[206]},"counts_by_year":[{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2019-07-30T00:00:00"}