{"id":"https://openalex.org/W14085413","doi":"https://doi.org/10.1007/978-3-642-55195-6_23","title":"Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences","display_name":"Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W14085413","doi":"https://doi.org/10.1007/978-3-642-55195-6_23","mag":"14085413"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-55195-6_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-55195-6_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100617992","display_name":"Yongchao Liu","orcid":"https://orcid.org/0000-0003-3440-9675"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Yongchao Liu","raw_affiliation_strings":["Institut f\u00fcr Informatik, Johannes Gutenberg Universit\u00e4t Mainz, 55099, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Johannes Gutenberg Universit\u00e4t Mainz, 55099, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020388832","display_name":"Bertil Schmidt","orcid":"https://orcid.org/0000-0003-2597-8331"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bertil Schmidt","raw_affiliation_strings":["Institut f\u00fcr Informatik, Johannes Gutenberg Universit\u00e4t Mainz, 55099, Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Johannes Gutenberg Universit\u00e4t Mainz, 55099, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100617992"],"corresponding_institution_ids":["https://openalex.org/I197323543"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.8119,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.84421764,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"247","last_page":"257"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9488999843597412,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.9164010882377625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8416529893875122},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.8115590810775757},{"id":"https://openalex.org/keywords/backtracking","display_name":"Backtracking","score":0.7786620855331421},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7610064148902893},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.5557281374931335},{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.49005234241485596},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.4696962833404541},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45099568367004395},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.44892120361328125},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.44467005133628845},{"id":"https://openalex.org/keywords/kepler","display_name":"Kepler","score":0.4280024766921997},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4269736409187317},{"id":"https://openalex.org/keywords/gpu-cluster","display_name":"GPU cluster","score":0.42304643988609314},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.36961567401885986},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.2166161835193634},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.13848966360092163},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12426578998565674}],"concepts":[{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.9164010882377625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8416529893875122},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.8115590810775757},{"id":"https://openalex.org/C156884757","wikidata":"https://www.wikidata.org/wiki/Q798554","display_name":"Backtracking","level":2,"score":0.7786620855331421},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7610064148902893},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5557281374931335},{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.49005234241485596},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.4696962833404541},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45099568367004395},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.44892120361328125},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.44467005133628845},{"id":"https://openalex.org/C207963374","wikidata":"https://www.wikidata.org/wiki/Q47592","display_name":"Kepler","level":3,"score":0.4280024766921997},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4269736409187317},{"id":"https://openalex.org/C2781335571","wikidata":"https://www.wikidata.org/wiki/Q2633544","display_name":"GPU cluster","level":3,"score":0.42304643988609314},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.36961567401885986},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2166161835193634},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.13848966360092163},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12426578998565674},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150846664","wikidata":"https://www.wikidata.org/wiki/Q7602306","display_name":"Stars","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-55195-6_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-55195-6_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W145805655","https://openalex.org/W1986228396","https://openalex.org/W2006899413","https://openalex.org/W2011652244","https://openalex.org/W2013733655","https://openalex.org/W2015292449","https://openalex.org/W2015915218","https://openalex.org/W2022368654","https://openalex.org/W2036880373","https://openalex.org/W2037275405","https://openalex.org/W2044338118","https://openalex.org/W2055043387","https://openalex.org/W2065461987","https://openalex.org/W2068448872","https://openalex.org/W2068659823","https://openalex.org/W2087064593","https://openalex.org/W2099084006","https://openalex.org/W2106882534","https://openalex.org/W2107824361","https://openalex.org/W2108215151","https://openalex.org/W2108234281","https://openalex.org/W2116508956","https://openalex.org/W2117683095","https://openalex.org/W2118874283","https://openalex.org/W2120866529","https://openalex.org/W2122942724","https://openalex.org/W2128524432","https://openalex.org/W2132967231","https://openalex.org/W2133098231","https://openalex.org/W2133540884","https://openalex.org/W2139523073","https://openalex.org/W2140858267","https://openalex.org/W2141273080","https://openalex.org/W2141697594","https://openalex.org/W2142667471","https://openalex.org/W2143210482","https://openalex.org/W2146379626","https://openalex.org/W2155503253","https://openalex.org/W2160097763","https://openalex.org/W2165949232","https://openalex.org/W2166081493","https://openalex.org/W2166760518","https://openalex.org/W2170551349","https://openalex.org/W2170896626","https://openalex.org/W2172031170","https://openalex.org/W2601913882","https://openalex.org/W4250119831","https://openalex.org/W4251237680"],"related_works":["https://openalex.org/W2739740241","https://openalex.org/W1974923383","https://openalex.org/W2085105049","https://openalex.org/W2883383827","https://openalex.org/W2058527440","https://openalex.org/W4214765606","https://openalex.org/W2334331871","https://openalex.org/W2612954225","https://openalex.org/W1586106326","https://openalex.org/W2952973539"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
