{"id":"https://openalex.org/W2116084285","doi":"https://doi.org/10.1007/978-3-642-55032-4_35","title":"A Bioinformatics Workflow for Genetic Association Studies of Traits in Indonesian Rice","display_name":"A Bioinformatics Workflow for Genetic Association Studies of Traits in Indonesian Rice","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2116084285","doi":"https://doi.org/10.1007/978-3-642-55032-4_35","mag":"2116084285"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-55032-4_35","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-55032-4_35","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-55032-4_35.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-55032-4_35.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028199808","display_name":"James W. Baurley","orcid":"https://orcid.org/0000-0003-4116-7723"},"institutions":[{"id":"https://openalex.org/I166073570","display_name":"Binus University","ror":"https://ror.org/03zmf4s77","country_code":"ID","type":"education","lineage":["https://openalex.org/I166073570"]}],"countries":["ID"],"is_corresponding":true,"raw_author_name":"James W. Baurley","raw_affiliation_strings":["Bioinformatics Research Group, Bina Nusantara University, Jakarta, Indonesia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Bina Nusantara University, Jakarta, Indonesia","institution_ids":["https://openalex.org/I166073570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052689356","display_name":"Bens Pardamean","orcid":"https://orcid.org/0000-0002-7404-9005"},"institutions":[{"id":"https://openalex.org/I166073570","display_name":"Binus University","ror":"https://ror.org/03zmf4s77","country_code":"ID","type":"education","lineage":["https://openalex.org/I166073570"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Bens Pardamean","raw_affiliation_strings":["Bioinformatics Research Group, Bina Nusantara University, Jakarta, Indonesia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Bina Nusantara University, Jakarta, Indonesia","institution_ids":["https://openalex.org/I166073570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016595425","display_name":"Anzaludin Samsinga Perbangsa","orcid":"https://orcid.org/0000-0002-0343-8951"},"institutions":[{"id":"https://openalex.org/I166073570","display_name":"Binus University","ror":"https://ror.org/03zmf4s77","country_code":"ID","type":"education","lineage":["https://openalex.org/I166073570"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Anzaludin S. Perbangsa","raw_affiliation_strings":["Bioinformatics Research Group, Bina Nusantara University, Jakarta, Indonesia"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Bina Nusantara University, Jakarta, Indonesia","institution_ids":["https://openalex.org/I166073570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031567009","display_name":"Dwinita Wikan Utami","orcid":"https://orcid.org/0000-0002-5873-0570"},"institutions":[{"id":"https://openalex.org/I4210126772","display_name":"Indonesian Agency for Agricultural Research and Development","ror":"https://ror.org/038v7z909","country_code":"ID","type":"facility","lineage":["https://openalex.org/I4210126772"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Dwinita Utami","raw_affiliation_strings":["Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia"],"affiliations":[{"raw_affiliation_string":"Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia","institution_ids":["https://openalex.org/I4210126772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012353767","display_name":"Habib Rijzaani","orcid":"https://orcid.org/0000-0001-5981-1869"},"institutions":[{"id":"https://openalex.org/I4210126772","display_name":"Indonesian Agency for Agricultural Research and Development","ror":"https://ror.org/038v7z909","country_code":"ID","type":"facility","lineage":["https://openalex.org/I4210126772"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Habib Rijzaani","raw_affiliation_strings":["Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia"],"affiliations":[{"raw_affiliation_string":"Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia","institution_ids":["https://openalex.org/I4210126772"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057743950","display_name":"Dani Satyawan","orcid":"https://orcid.org/0000-0001-9827-5974"},"institutions":[{"id":"https://openalex.org/I4210126772","display_name":"Indonesian Agency for Agricultural Research and Development","ror":"https://ror.org/038v7z909","country_code":"ID","type":"facility","lineage":["https://openalex.org/I4210126772"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Dani Satyawan","raw_affiliation_strings":["Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia"],"affiliations":[{"raw_affiliation_string":"Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia","institution_ids":["https://openalex.org/I4210126772"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028199808"],"corresponding_institution_ids":["https://openalex.org/I166073570"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9073,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.81101049,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"356","last_page":"364"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8079407215118408},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4450758397579193},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39342576265335083},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.33457159996032715},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32455748319625854},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.31567028164863586}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8079407215118408},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4450758397579193},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39342576265335083},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.33457159996032715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32455748319625854},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.31567028164863586}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-55032-4_35","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-55032-4_35","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-55032-4_35.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-01397232v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01397232","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2nd Information and Communication Technology - EurAsia Conference (ICT-EurAsia), Apr 2014, Bali, Indonesia. pp.356-364, ⟨10.1007/978-3-642-55032-4_35⟩","raw_type":"Conference papers"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-55032-4_35","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-55032-4_35","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-55032-4_35.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320315328","display_name":"Kementerian Pertanian Republik Indonesia","ror":null},{"id":"https://openalex.org/F4320336712","display_name":"Badan Penelitian dan Pengembangan Pertanian","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116084285.pdf","grobid_xml":"https://content.openalex.org/works/W2116084285.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2017586115","https://openalex.org/W2104186060","https://openalex.org/W2134036574","https://openalex.org/W2157752701","https://openalex.org/W2161633633","https://openalex.org/W2175948239","https://openalex.org/W2286715099"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"Asian":[0,24],"rice":[1,25,64,109,166],"is":[2,13,34],"a":[3,44,59,74,114,148],"staple":[4],"food":[5,16],"in":[6,23,36,67,125,128,172],"Indonesia":[7,129],"and":[8,10,19,32,50,55,81,85,91,101,120,141,162,183],"worldwide,":[9],"its":[11],"production":[12],"essential":[14],"to":[15,26,138,153,180],"security.":[17],"Cataloging":[18],"linking":[20],"genetic":[21,54,156],"variation":[22],"important":[27],"traits,":[28],"such":[29],"as":[30],"quality":[31,48],"yield,":[33],"needed":[35],"developing":[37],"superior":[38],"varieties":[39,65,110],"of":[40,53,62,164],"rice.":[41],"We":[42,133,175],"develop":[43],"bioinformatics":[45,70,136],"workflow":[46,71,137,182],"for":[47,58,78,122,147,170,185],"control":[49,84],"data":[51,57,79,86,97,140],"analysis":[52,87,98],"trait":[56,150],"diversity":[60],"panel":[61],"467":[63,108],"found":[66],"Indonesia.":[68],"The":[69,107],"operates":[72],"using":[73,93,113],"back-end":[75],"relational":[76],"database":[77],"storage":[80],"retrieval.":[82],"Quality":[83],"procedures":[88],"are":[89],"implemented":[90],"automated":[92],"the":[94,102,165,181],"whole":[95],"genome":[96],"toolset,":[99],"PLINK,":[100],"[R]":[103],"statistical":[104,188],"computing":[105],"language.":[106],"were":[111],"genotyped":[112],"custom":[115],"array":[116],"(717,312":[117],"genotypes":[118],"total)":[119],"phenotyped":[121],"12":[123,163],"traits":[124],"four":[126],"locations":[127],"across":[130],"multiple":[131],"seasons.":[132],"applied":[134],"our":[135],"these":[139,173],"present":[142],"prototype":[143],"genome-wide":[144],"association":[145,171],"results":[146],"continuous":[149],"-":[151],"days":[152],"flowering.":[154],"Two":[155],"variants,":[157],"located":[158],"on":[159],"chromosome":[160],"4":[161],"genome,":[167],"showed":[168],"evidence":[169],"data.":[174],"conclude":[176],"by":[177],"outlining":[178],"extensions":[179],"plans":[184],"more":[186],"sophisticated":[187],"analyses.":[189]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}