{"id":"https://openalex.org/W2116423401","doi":"https://doi.org/10.1007/978-3-642-54455-2_3","title":"Optimisation Problems for Pairwise RNA Sequence and Structure Comparison: A Brief Survey","display_name":"Optimisation Problems for Pairwise RNA Sequence and Structure Comparison: A Brief Survey","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2116423401","doi":"https://doi.org/10.1007/978-3-642-54455-2_3","mag":"2116423401"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-54455-2_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-54455-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011363744","display_name":"Alain Denise","orcid":"https://orcid.org/0000-0003-4484-4996"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210126360","display_name":"Centre Inria de Saclay","ror":"https://ror.org/0315e5x55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210126360"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alain Denise","raw_affiliation_strings":["IGM, Universit\u00e9 Paris-Sud and CNRS, France","INRIA Saclay, France","LRI, Universit\u00e9 Paris-Sud and CNRS, France","LRI - Laboratoire de Recherche en Informatique (LRI - B\u00e2timents 650-660 Universit\u00e9 Paris-Sud 91405 Orsay Cedex - France)","AMIB - Algorithms and Models for Integrative Biology (Algorithmes et mod\u00e8les pour la Biologie Int\u00e9grative\r\nB\u00e2timent Alan Turing - Campus de l'\u00c9cole Polytechnique - 1 rue Honor\u00e9 d'Estienne d'Orves - 91120 Palaiseau - France)","IGM - Institut de g\u00e9n\u00e9tique et microbiologie [Orsay] (B\u00e2timents 400 et 409\r\nUFR des Sciences - Universit\u00e9 Paris-Sud 11\r\n15, rue Georges Cl\u00e9menceau - F 91405 ORSAY Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IGM, Universit\u00e9 Paris-Sud and CNRS, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"INRIA Saclay, France","institution_ids":["https://openalex.org/I4210126360","https://openalex.org/I1326498283"]},{"raw_affiliation_string":"LRI, Universit\u00e9 Paris-Sud and CNRS, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"LRI - Laboratoire de Recherche en Informatique (LRI - B\u00e2timents 650-660 Universit\u00e9 Paris-Sud 91405 Orsay Cedex - France)","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"AMIB - Algorithms and Models for Integrative Biology (Algorithmes et mod\u00e8les pour la Biologie Int\u00e9grative\r\nB\u00e2timent Alan Turing - Campus de l'\u00c9cole Polytechnique - 1 rue Honor\u00e9 d'Estienne d'Orves - 91120 Palaiseau - France)","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"IGM - Institut de g\u00e9n\u00e9tique et microbiologie [Orsay] (B\u00e2timents 400 et 409\r\nUFR des Sciences - Universit\u00e9 Paris-Sud 11\r\n15, rue Georges Cl\u00e9menceau - F 91405 ORSAY Cedex - France)","institution_ids":["https://openalex.org/I102197404"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048257303","display_name":"Philippe Rinaudo","orcid":null},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I195731000","display_name":"Universit\u00e9 de Versailles Saint-Quentin-en-Yvelines","ror":"https://ror.org/03mkjjy25","country_code":"FR","type":"education","lineage":["https://openalex.org/I195731000","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210096782","display_name":"Laboratoire Pluridisciplinaire de Recherche en Ing\u00e9nierie des Syst\u00e8mes, M\u00e9canique et Energ\u00e9tique","ror":"https://ror.org/00sbth994","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12449238","https://openalex.org/I4210096782","https://openalex.org/I4210143826"]},{"id":"https://openalex.org/I4210126360","display_name":"Centre Inria de Saclay","ror":"https://ror.org/0315e5x55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210126360"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Philippe Rinaudo","raw_affiliation_strings":["INRIA Saclay, France","LRI, Universit\u00e9 Paris-Sud and CNRS, France","PRISM, Universit\u00e9 Versailles-St-Quentin and CNRS, France","PRISM - Parall\u00e9lisme, R\u00e9seaux, Syst\u00e8mes, Mod\u00e9lisation (UFR des sciences PRISM \r\n B\u00e2timent Descartes \r\n45 avenue des Etats-Unis\r\n78035 VERSAILLES - France)","AMIB - Algorithms and Models for Integrative Biology (Algorithmes et mod\u00e8les pour la Biologie Int\u00e9grative\r\nB\u00e2timent Alan Turing - Campus de l'\u00c9cole Polytechnique - 1 rue Honor\u00e9 d'Estienne d'Orves - 91120 Palaiseau - France)","LRI - Laboratoire de Recherche en Informatique (LRI - B\u00e2timents 650-660 Universit\u00e9 Paris-Sud 91405 Orsay Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRIA Saclay, France","institution_ids":["https://openalex.org/I4210126360","https://openalex.org/I1326498283"]},{"raw_affiliation_string":"LRI, Universit\u00e9 Paris-Sud and CNRS, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"PRISM, Universit\u00e9 Versailles-St-Quentin and CNRS, France","institution_ids":["https://openalex.org/I195731000","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"PRISM - Parall\u00e9lisme, R\u00e9seaux, Syst\u00e8mes, Mod\u00e9lisation (UFR des sciences PRISM \r\n B\u00e2timent Descartes \r\n45 avenue des Etats-Unis\r\n78035 VERSAILLES - France)","institution_ids":["https://openalex.org/I4210096782"]},{"raw_affiliation_string":"AMIB - Algorithms and Models for Integrative Biology (Algorithmes et mod\u00e8les pour la Biologie Int\u00e9grative\r\nB\u00e2timent Alan Turing - Campus de l'\u00c9cole Polytechnique - 1 rue Honor\u00e9 d'Estienne d'Orves - 91120 Palaiseau - France)","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"LRI - Laboratoire de Recherche en Informatique (LRI - B\u00e2timents 650-660 Universit\u00e9 Paris-Sud 91405 Orsay Cedex - France)","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.9972,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86680833,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"70","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7711385488510132},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6810404062271118},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.5485473871231079},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46312791109085083},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.440395712852478},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.4243859052658081},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.42034047842025757},{"id":"https://openalex.org/keywords/computational-problem","display_name":"Computational problem","score":0.41904258728027344},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3309233486652374},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2764264643192291},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11017358303070068},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10231459140777588},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0778755247592926}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7711385488510132},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6810404062271118},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.5485473871231079},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46312791109085083},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.440395712852478},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.4243859052658081},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.42034047842025757},{"id":"https://openalex.org/C19754495","wikidata":"https://www.wikidata.org/wiki/Q3435924","display_name":"Computational problem","level":2,"score":0.41904258728027344},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3309233486652374},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2764264643192291},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11017358303070068},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10231459140777588},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0778755247592926},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-54455-2_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-54455-2_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-00759573v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00759573","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Transactions on Computational Collective Intelligence, 2014, 13, pp.70-82. ⟨10.1007/978-3-642-54455-2_3⟩","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W48115242","https://openalex.org/W1495524224","https://openalex.org/W1511188453","https://openalex.org/W1543611576","https://openalex.org/W1543796220","https://openalex.org/W1546427870","https://openalex.org/W1554383491","https://openalex.org/W1555689815","https://openalex.org/W1557536303","https://openalex.org/W1591070054","https://openalex.org/W1600401233","https://openalex.org/W1605903931","https://openalex.org/W1608065338","https://openalex.org/W1774857219","https://openalex.org/W1834982196","https://openalex.org/W1950410402","https://openalex.org/W1976373002","https://openalex.org/W1978036746","https://openalex.org/W1994042976","https://openalex.org/W2003062976","https://openalex.org/W2003956388","https://openalex.org/W2007644443","https://openalex.org/W2008288996","https://openalex.org/W2008803097","https://openalex.org/W2011368877","https://openalex.org/W2022712317","https://openalex.org/W2028639276","https://openalex.org/W2048401962","https://openalex.org/W2053197884","https://openalex.org/W2053905301","https://openalex.org/W2061158331","https://openalex.org/W2063673953","https://openalex.org/W2074231493","https://openalex.org/W2077770566","https://openalex.org/W2093727387","https://openalex.org/W2101219438","https://openalex.org/W2104702173","https://openalex.org/W2106478835","https://openalex.org/W2115549026","https://openalex.org/W2126221870","https://openalex.org/W2131538597","https://openalex.org/W2134861301","https://openalex.org/W2138007734","https://openalex.org/W2143407915","https://openalex.org/W2147828873","https://openalex.org/W2151656734","https://openalex.org/W2157171712","https://openalex.org/W2172085375","https://openalex.org/W2477408078","https://openalex.org/W2568184819","https://openalex.org/W2610552050","https://openalex.org/W2616464615","https://openalex.org/W4212877087","https://openalex.org/W4234667141","https://openalex.org/W4238014149"],"related_works":["https://openalex.org/W4249702239","https://openalex.org/W2901080149","https://openalex.org/W1512399864","https://openalex.org/W4205799190","https://openalex.org/W3203828497","https://openalex.org/W2374430960","https://openalex.org/W4235807378","https://openalex.org/W4402742378","https://openalex.org/W2792714856","https://openalex.org/W1548964214"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}