{"id":"https://openalex.org/W1196102438","doi":"https://doi.org/10.1007/978-3-642-45062-4_95","title":"A Consensus Approach for Identification of Protein-Protein Interaction Sites in Homo Sapiens","display_name":"A Consensus Approach for Identification of Protein-Protein Interaction Sites in Homo Sapiens","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1196102438","doi":"https://doi.org/10.1007/978-3-642-45062-4_95","mag":"1196102438"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-45062-4_95","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-45062-4_95","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-45062-4_95.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-45062-4_95.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086226641","display_name":"Brijesh Kumar Sriwastava","orcid":"https://orcid.org/0000-0001-7289-0610"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brijesh K. Sriwastava","raw_affiliation_strings":["Department of Computer Science and Engineering, Government College of Engineering and Leather Technology, Kolkata, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Government College of Engineering and Leather Technology, Kolkata, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043105133","display_name":"Subhadip Basu","orcid":"https://orcid.org/0000-0003-1780-0461"},"institutions":[{"id":"https://openalex.org/I170979836","display_name":"Jadavpur University","ror":"https://ror.org/02af4h012","country_code":"IN","type":"education","lineage":["https://openalex.org/I170979836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhadip Basu","raw_affiliation_strings":["Department of Computer Science and Engineering, Jadavpur University, Kolkata, India","[Department of Computer Science & Engineering, Jadavpur University, Kolkata, India]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Jadavpur University, Kolkata, India","institution_ids":["https://openalex.org/I170979836"]},{"raw_affiliation_string":"[Department of Computer Science & Engineering, Jadavpur University, Kolkata, India]","institution_ids":["https://openalex.org/I170979836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072356717","display_name":"Ujjwal Maulik","orcid":"https://orcid.org/0000-0003-1167-0774"},"institutions":[{"id":"https://openalex.org/I170979836","display_name":"Jadavpur University","ror":"https://ror.org/02af4h012","country_code":"IN","type":"education","lineage":["https://openalex.org/I170979836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ujjwal Maulik","raw_affiliation_strings":["Department of Computer Science and Engineering, Jadavpur University, Kolkata, India","[Department of Computer Science & Engineering, Jadavpur University, Kolkata, India]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Jadavpur University, Kolkata, India","institution_ids":["https://openalex.org/I170979836"]},{"raw_affiliation_string":"[Department of Computer Science & Engineering, Jadavpur University, Kolkata, India]","institution_ids":["https://openalex.org/I170979836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021916927","display_name":"Dariusz Plewczy\u0144ski","orcid":"https://orcid.org/0000-0002-3840-7610"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Dariusz Plewczynski","raw_affiliation_strings":["Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Warsaw, Poland","Interdisciplinary Centre for Mathematical and Computational Modelling; University of Warsaw; Warsaw Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Interdisciplinary Centre for Mathematical and Computational Modelling; University of Warsaw; Warsaw Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":0.2723,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.40664917,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"674","last_page":"679"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6810532808303833},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6670898795127869},{"id":"https://openalex.org/keywords/homo-sapiens","display_name":"Homo sapiens","score":0.5858404040336609},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4950663149356842},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.45884665846824646},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43207040429115295},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4290730655193329},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4243621230125427},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3470247983932495},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.26555299758911133},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2414204180240631},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20438221096992493},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15165752172470093},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10013473033905029}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6810532808303833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6670898795127869},{"id":"https://openalex.org/C2777938546","wikidata":"https://www.wikidata.org/wiki/Q5","display_name":"Homo sapiens","level":2,"score":0.5858404040336609},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4950663149356842},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.45884665846824646},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43207040429115295},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4290730655193329},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4243621230125427},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3470247983932495},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.26555299758911133},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2414204180240631},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20438221096992493},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15165752172470093},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10013473033905029},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-45062-4_95","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-45062-4_95","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-45062-4_95.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-45062-4_95","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-45062-4_95","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-45062-4_95.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1196102438.pdf","grobid_xml":"https://content.openalex.org/works/W1196102438.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W128901175","https://openalex.org/W606184978","https://openalex.org/W1975950647","https://openalex.org/W1988714027","https://openalex.org/W2010289445","https://openalex.org/W2018744542","https://openalex.org/W2033855745","https://openalex.org/W2037036397","https://openalex.org/W2053699536","https://openalex.org/W2060503830","https://openalex.org/W2065304353","https://openalex.org/W2068538859","https://openalex.org/W2088038235","https://openalex.org/W2090699441","https://openalex.org/W2118737745","https://openalex.org/W2121166097","https://openalex.org/W2130479394","https://openalex.org/W2130687290","https://openalex.org/W2167851075","https://openalex.org/W4243922671"],"related_works":["https://openalex.org/W122800452","https://openalex.org/W3120667788","https://openalex.org/W279682321","https://openalex.org/W4386574598","https://openalex.org/W1004557661","https://openalex.org/W2183771695","https://openalex.org/W2003790670","https://openalex.org/W100270783","https://openalex.org/W1976952616","https://openalex.org/W3107297455"],"abstract_inverted_index":{"The":[0,70,87,143],"physico-chemical":[1,68],"properties":[2],"of":[3,12,19,36,62,83,89,138,150],"interaction":[4,54],"interfaces":[5],"have":[6],"a":[7,20,28,128],"crucial":[8],"role":[9],"in":[10,47,56],"characterization":[11],"protein\u2013protein":[13],"interactions.":[14],"Given":[15],"the":[16,23,34,42,48,77,94,139,147,156],"unbound":[17],"structure":[18],"protein":[21,57,78],"and":[22,123],"fact":[24],"that":[25,44,115],"it":[26],"forms":[27],"complex":[29],"with":[30,66],"another":[31],"known":[32],"protein,":[33],"objective":[35],"this":[37],"work":[38],"is":[39,91,132,153],"to":[40,52,93,134,155],"identify":[41],"residues":[43],"are":[45,74,113],"involved":[46],"interaction.":[49],"We":[50],"attempt":[51],"predict":[53],"sites":[55],"complexes":[58],"using":[59,80],"local":[60,71],"composition":[61],"amino":[63,85],"acids":[64],"together":[65],"their":[67,106],"characteristics.":[69],"sequence":[72],"segments":[73],"dissected":[75],"from":[76],"sequences":[79],"sliding":[81],"window":[82],"21":[84],"acids.":[86],"list":[88],"LSSs":[90],"passed":[92],"support":[95],"vector":[96],"machine":[97],"(SVM)":[98],"predictor,":[99],"which":[100,152],"identifies":[101],"interacting":[102],"residue":[103],"pairs":[104],"considering":[105],"inter-atom":[107],"distances.":[108],"Three":[109],"different":[110],"SVM":[111,158],"predictors":[112],"designed":[114,133],"generate":[116],"area":[117],"under":[118],"ROC":[119],"curve":[120],"(AUC),":[121],"Recall":[122],"Precision":[124],"optimized":[125],"results.":[126,160],"Finally":[127],"3-star":[129],"consensus":[130,144],"strategy":[131],"analyze":[135],"33":[136],"hetero-complexes":[137],"Homo":[140],"sapiens":[141],"organism.":[142],"approach":[145],"generates":[146],"AUC":[148],"score":[149],"0.7376,":[151],"superior":[154],"individual":[157],"classification":[159]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
