{"id":"https://openalex.org/W1632873484","doi":"https://doi.org/10.1007/978-3-642-41190-8_34","title":"Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking","display_name":"Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1632873484","doi":"https://doi.org/10.1007/978-3-642-41190-8_34","mag":"1632873484"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-41190-8_34","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-41190-8_34","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-41190-8_34.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-41190-8_34.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076453514","display_name":"\u00c9lodie Laine","orcid":"https://orcid.org/0000-0003-4870-6304"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elodie Laine","raw_affiliation_strings":["CNRS, UMR 7238, Laboratoire de G\u00e9nomique des Microorganismes, Universit\u00e9 Pierre et Marie Curie, Paris, 75006, France","UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l\u2019Ecole de M\u00e9decine, 75006, Paris, France","UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l'Ecole de M\u00e9decine, 75006, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, UMR 7238, Laboratoire de G\u00e9nomique des Microorganismes, Universit\u00e9 Pierre et Marie Curie, Paris, 75006, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l\u2019Ecole de M\u00e9decine, 75006, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l'Ecole de M\u00e9decine, 75006, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038174177","display_name":"Alessandra Carbone","orcid":"https://orcid.org/0000-0003-2098-5743"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alessandra Carbone","raw_affiliation_strings":["CNRS, UMR 7238, Laboratoire de G\u00e9nomique des Microorganismes, Universit\u00e9 Pierre et Marie Curie, Paris, 75006, France","UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l\u2019Ecole de M\u00e9decine, 75006, Paris, France","UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l'Ecole de M\u00e9decine, 75006, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, UMR 7238, Laboratoire de G\u00e9nomique des Microorganismes, Universit\u00e9 Pierre et Marie Curie, Paris, 75006, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l\u2019Ecole de M\u00e9decine, 75006, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"UMR 7238, Equipe de G\u00e9nomique Analytique, Universit\u00e9 Pierre et Marie Curie, 15 rue de l'Ecole de M\u00e9decine, 75006, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05511811,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"318","last_page":"325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.9053406715393066},{"id":"https://openalex.org/keywords/complementarity","display_name":"Complementarity (molecular biology)","score":0.7923586368560791},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.6343884468078613},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5780287981033325},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.5596938133239746},{"id":"https://openalex.org/keywords/searching-the-conformational-space-for-docking","display_name":"Searching the conformational space for docking","score":0.5267060399055481},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4929080009460449},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4627310037612915},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37806928157806396},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.35463517904281616},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.25991716980934143},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2369418740272522},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.22441160678863525},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.194430410861969},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.1781589686870575},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15738320350646973},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.140936940908432},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0552939772605896}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.9053406715393066},{"id":"https://openalex.org/C202269582","wikidata":"https://www.wikidata.org/wiki/Q2644277","display_name":"Complementarity (molecular biology)","level":2,"score":0.7923586368560791},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.6343884468078613},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5780287981033325},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.5596938133239746},{"id":"https://openalex.org/C44695244","wikidata":"https://www.wikidata.org/wiki/Q7441727","display_name":"Searching the conformational space for docking","level":3,"score":0.5267060399055481},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4929080009460449},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4627310037612915},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37806928157806396},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.35463517904281616},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.25991716980934143},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2369418740272522},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.22441160678863525},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.194430410861969},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.1781589686870575},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15738320350646973},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.140936940908432},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0552939772605896},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-41190-8_34","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-41190-8_34","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-41190-8_34.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-41190-8_34","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-41190-8_34","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-41190-8_34.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1789083493","display_name":"LABEX pour la mod\u00e9lisation et la simulation scientifiques en recherche","funder_award_id":"ANR-11-LABX-0037","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3183336939","display_name":"Vers une cartographie haute r\u00e9solution des interactions prot\u00e9iques \u00e0 l\u2019\u00e9chelle du g\u00e9nome.","funder_award_id":"ANR-11-BINF-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1632873484.pdf","grobid_xml":"https://content.openalex.org/works/W1632873484.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1968922152","https://openalex.org/W2014744153","https://openalex.org/W2026490303","https://openalex.org/W2062858001","https://openalex.org/W2074719974","https://openalex.org/W2086224494","https://openalex.org/W2105438341","https://openalex.org/W2118517681","https://openalex.org/W2128796532","https://openalex.org/W2160223767","https://openalex.org/W4252684946"],"related_works":["https://openalex.org/W1489925612","https://openalex.org/W2533022751","https://openalex.org/W2152872596","https://openalex.org/W2585040066","https://openalex.org/W4248527317","https://openalex.org/W4246463539","https://openalex.org/W4213013656","https://openalex.org/W4235673852","https://openalex.org/W2477070048","https://openalex.org/W2072180710"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
