{"id":"https://openalex.org/W2257802904","doi":"https://doi.org/10.1007/978-3-642-39958-9_32","title":"cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics","display_name":"cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2257802904","doi":"https://doi.org/10.1007/978-3-642-39958-9_32","mag":"2257802904"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-39958-9_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-39958-9_32","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043650939","display_name":"Marco S. Nobile","orcid":"https://orcid.org/0000-0002-7692-7203"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco S. Nobile","raw_affiliation_strings":["Dipartimento di Informatica, Sistemistica e Comunicazione, Universit\u00e0 degli Studi di Milano-Bicocca, Viale Sarca 336, 20126, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Sistemistica e Comunicazione, Universit\u00e0 degli Studi di Milano-Bicocca, Viale Sarca 336, 20126, Milano, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072712347","display_name":"Daniela Besozzi","orcid":"https://orcid.org/0000-0001-5532-3059"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210162062","display_name":"Istituto di Analisi dei Sistemi ed Informatica Antonio Ruberti","ror":"https://ror.org/054ye0e45","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155236","https://openalex.org/I4210162062"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniela Besozzi","raw_affiliation_strings":["Consiglio Nazionale delle Ricerche, Istituto di Analisi dei Sistemi ed Informatica \u201cAntonio Ruberti\u201d, iale Manzoni 30, 00185, Roma, Italy","Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Via Comelico 39, 20135, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Consiglio Nazionale delle Ricerche, Istituto di Analisi dei Sistemi ed Informatica \u201cAntonio Ruberti\u201d, iale Manzoni 30, 00185, Roma, Italy","institution_ids":["https://openalex.org/I4210162062"]},{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Via Comelico 39, 20135, Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013723473","display_name":"Paolo Cazzaniga","orcid":"https://orcid.org/0000-0001-7780-0434"},"institutions":[{"id":"https://openalex.org/I11039511","display_name":"University of Bergamo","ror":"https://ror.org/02mbd5571","country_code":"IT","type":"education","lineage":["https://openalex.org/I11039511"]},{"id":"https://openalex.org/I4210162062","display_name":"Istituto di Analisi dei Sistemi ed Informatica Antonio Ruberti","ror":"https://ror.org/054ye0e45","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155236","https://openalex.org/I4210162062"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Cazzaniga","raw_affiliation_strings":["Consiglio Nazionale delle Ricerche, Istituto di Analisi dei Sistemi ed Informatica \u201cAntonio Ruberti\u201d, iale Manzoni 30, 00185, Roma, Italy","Dipartimento di Scienze Umane e Sociali, Universit\u00e0 degli Studi di Bergamo, Piazzale S. Agostino 2, 24129, Bergamo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Consiglio Nazionale delle Ricerche, Istituto di Analisi dei Sistemi ed Informatica \u201cAntonio Ruberti\u201d, iale Manzoni 30, 00185, Roma, Italy","institution_ids":["https://openalex.org/I4210162062"]},{"raw_affiliation_string":"Dipartimento di Scienze Umane e Sociali, Universit\u00e0 degli Studi di Bergamo, Piazzale S. Agostino 2, 24129, Bergamo, Italy","institution_ids":["https://openalex.org/I11039511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073163964","display_name":"Giancarlo Mauri","orcid":"https://orcid.org/0000-0003-3520-4022"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giancarlo Mauri","raw_affiliation_strings":["Dipartimento di Informatica, Sistemistica e Comunicazione, Universit\u00e0 degli Studi di Milano-Bicocca, Viale Sarca 336, 20126, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Sistemistica e Comunicazione, Universit\u00e0 degli Studi di Milano-Bicocca, Viale Sarca 336, 20126, Milano, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065568541","display_name":"Dario Pescini","orcid":"https://orcid.org/0000-0002-3090-4823"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Dario Pescini","raw_affiliation_strings":["Dipartimento di Statistica e Metodi Quantitativi, Universit\u00e0 degli Studi di Milano-Bicocca, Via Bicocca degli Arcimboldi 8, 20126, Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Statistica e Metodi Quantitativi, Universit\u00e0 degli Studi di Milano-Bicocca, Via Bicocca degli Arcimboldi 8, 20126, Milano, Italy","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.3406,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.98958028,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"344","last_page":"357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8604472875595093},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6711544990539551},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.6516883373260498},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6174497604370117},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6080527901649475},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.5450224876403809},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.5121898055076599},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4670514166355133},{"id":"https://openalex.org/keywords/memory-bandwidth","display_name":"Memory bandwidth","score":0.4365849792957306},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41786989569664},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.3101425766944885},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.15462934970855713},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12297216057777405}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8604472875595093},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6711544990539551},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.6516883373260498},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6174497604370117},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6080527901649475},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.5450224876403809},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.5121898055076599},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4670514166355133},{"id":"https://openalex.org/C188045654","wikidata":"https://www.wikidata.org/wiki/Q17148339","display_name":"Memory bandwidth","level":2,"score":0.4365849792957306},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41786989569664},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.3101425766944885},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.15462934970855713},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12297216057777405},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-642-39958-9_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-39958-9_32","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:aisberg.unibg.it:10446/29958","is_oa":false,"landing_page_url":"http://hdl.handle.net/10446/29958","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:boa.unimib.it:10281/50720","is_oa":false,"landing_page_url":"http://hdl.handle.net/10281/50720","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W100464641","https://openalex.org/W178214986","https://openalex.org/W1543750907","https://openalex.org/W1563455869","https://openalex.org/W1825358382","https://openalex.org/W1976811972","https://openalex.org/W1985911638","https://openalex.org/W1987750530","https://openalex.org/W1990072743","https://openalex.org/W1999902057","https://openalex.org/W2024845465","https://openalex.org/W2029918421","https://openalex.org/W2049917443","https://openalex.org/W2051959027","https://openalex.org/W2080619411","https://openalex.org/W2085420329","https://openalex.org/W2102653059","https://openalex.org/W2111609443","https://openalex.org/W2132018771","https://openalex.org/W2139129111","https://openalex.org/W2143955972","https://openalex.org/W2144476439","https://openalex.org/W2144663944","https://openalex.org/W2160658674","https://openalex.org/W2167154952","https://openalex.org/W2167543722","https://openalex.org/W2168648059","https://openalex.org/W2170484057","https://openalex.org/W2484971506"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2027972911","https://openalex.org/W2983282793","https://openalex.org/W4376647684","https://openalex.org/W4221139464"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}