{"id":"https://openalex.org/W2231319185","doi":"https://doi.org/10.1007/978-3-642-39437-9_10","title":"Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of \u201c-Omics\u201d Data and Systems Biology","display_name":"Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of \u201c-Omics\u201d Data and Systems Biology","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2231319185","doi":"https://doi.org/10.1007/978-3-642-39437-9_10","mag":"2231319185"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-39437-9_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-39437-9_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109069843","display_name":"Greg Butler","orcid":null},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Greg Butler","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","Department of Computer Science, Concordia University, H3G 1M8, Montreal, QC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]},{"raw_affiliation_string":"Department of Computer Science, Concordia University, H3G 1M8, Montreal, QC, Canada","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5109069843"],"corresponding_institution_ids":["https://openalex.org/I60158472"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.5802,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.71891981,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"113","last_page":"127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.716723620891571},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7117916345596313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7114216685295105},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4362877905368805},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4301831126213074},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3586162328720093},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3374632000923157},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24732908606529236},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20445221662521362},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15805739164352417},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10195252299308777},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09536010026931763}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.716723620891571},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7117916345596313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7114216685295105},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4362877905368805},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4301831126213074},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3586162328720093},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3374632000923157},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24732908606529236},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20445221662521362},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15805739164352417},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10195252299308777},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09536010026931763}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-39437-9_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-39437-9_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W626356915","https://openalex.org/W1487554690","https://openalex.org/W1580768657","https://openalex.org/W1586184005","https://openalex.org/W1603241183","https://openalex.org/W1971147414","https://openalex.org/W1982228765","https://openalex.org/W1985213868","https://openalex.org/W1996047071","https://openalex.org/W2004548026","https://openalex.org/W2008856488","https://openalex.org/W2011357608","https://openalex.org/W2026353653","https://openalex.org/W2027542060","https://openalex.org/W2032319966","https://openalex.org/W2041115195","https://openalex.org/W2043199972","https://openalex.org/W2048448217","https://openalex.org/W2055405620","https://openalex.org/W2058501095","https://openalex.org/W2065523235","https://openalex.org/W2068600821","https://openalex.org/W2070517644","https://openalex.org/W2082202339","https://openalex.org/W2082333984","https://openalex.org/W2084200259","https://openalex.org/W2091882482","https://openalex.org/W2092599114","https://openalex.org/W2094201044","https://openalex.org/W2097485877","https://openalex.org/W2098127859","https://openalex.org/W2098983518","https://openalex.org/W2099321785","https://openalex.org/W2107282968","https://openalex.org/W2108366237","https://openalex.org/W2110400988","https://openalex.org/W2111209586","https://openalex.org/W2113613985","https://openalex.org/W2114034054","https://openalex.org/W2117813757","https://openalex.org/W2117942296","https://openalex.org/W2119027485","https://openalex.org/W2122613768","https://openalex.org/W2124649441","https://openalex.org/W2126775187","https://openalex.org/W2129148077","https://openalex.org/W2130179418","https://openalex.org/W2135277010","https://openalex.org/W2135805255","https://openalex.org/W2137829494","https://openalex.org/W2138312771","https://openalex.org/W2141158585","https://openalex.org/W2142082312","https://openalex.org/W2143592941","https://openalex.org/W2145549598","https://openalex.org/W2148000475","https://openalex.org/W2150956643","https://openalex.org/W2152458080","https://openalex.org/W2152770371","https://openalex.org/W2154369878","https://openalex.org/W2154455818","https://openalex.org/W2156481615","https://openalex.org/W2157566389","https://openalex.org/W2158173168","https://openalex.org/W2166468869","https://openalex.org/W2168465568","https://openalex.org/W2951726307","https://openalex.org/W4247610414"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
