{"id":"https://openalex.org/W67242188","doi":"https://doi.org/10.1007/978-3-642-38697-8_13","title":"Colouring Space - A Coloured Framework for Spatial Modelling in Systems Biology","display_name":"Colouring Space - A Coloured Framework for Spatial Modelling in Systems Biology","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W67242188","doi":"https://doi.org/10.1007/978-3-642-38697-8_13","mag":"67242188"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-38697-8_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-38697-8_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102913036","display_name":"David Gilbert","orcid":"https://orcid.org/0000-0002-8872-4294"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Gilbert","raw_affiliation_strings":["School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, Middlesex, UB8 3PH, UK","School of Information Systems, Computing and Mathematics, Brunel University Uxbridge, Middlesex, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, Middlesex, UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University Uxbridge, Middlesex, UK","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002026696","display_name":"Monika Heiner","orcid":"https://orcid.org/0000-0003-1815-1205"},"institutions":[{"id":"https://openalex.org/I51783024","display_name":"Brandenburg University of Technology Cottbus-Senftenberg","ror":"https://ror.org/02wxx3e24","country_code":"DE","type":"education","lineage":["https://openalex.org/I51783024"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Monika Heiner","raw_affiliation_strings":["Computer Science Institute, Brandenburg University of Technology, Postbox 10 13 44, 03013, Cottbus, Germany","Computer Science Institute, Brandenburg University of Technology, Cottbus, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Institute, Brandenburg University of Technology, Postbox 10 13 44, 03013, Cottbus, Germany","institution_ids":["https://openalex.org/I51783024"]},{"raw_affiliation_string":"Computer Science Institute, Brandenburg University of Technology, Cottbus, Germany#TAB#","institution_ids":["https://openalex.org/I51783024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394589","display_name":"Fei Liu","orcid":"https://orcid.org/0000-0001-9415-0496"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Liu","raw_affiliation_strings":["Harbin Institute of Technology, West Dazhi Street 92, 150001, Harbin, China","Harbin Institute of Technology Harbin, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology, West Dazhi Street 92, 150001, Harbin, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"Harbin Institute of Technology Harbin, China#TAB#","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088371706","display_name":"Nigel J. Saunders","orcid":"https://orcid.org/0000-0002-0160-4573"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nigel Saunders","raw_affiliation_strings":["School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, Middlesex, UB8 3PH, UK","School of Information Systems, Computing and Mathematics, Brunel University Uxbridge, Middlesex, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, Middlesex, UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"School of Information Systems, Computing and Mathematics, Brunel University Uxbridge, Middlesex, UK","institution_ids":["https://openalex.org/I59433898"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":9.3184,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.98090946,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"230","last_page":"249"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.8207935690879822},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.7518841028213501},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6603214740753174},{"id":"https://openalex.org/keywords/basis","display_name":"Basis (linear algebra)","score":0.6225754022598267},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5546197891235352},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.5175263285636902},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45514988899230957},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.4268012046813965},{"id":"https://openalex.org/keywords/hybrid-system","display_name":"Hybrid system","score":0.41646310687065125},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.30539804697036743},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20571255683898926},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19111689925193787},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0856061577796936}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.8207935690879822},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.7518841028213501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6603214740753174},{"id":"https://openalex.org/C12426560","wikidata":"https://www.wikidata.org/wiki/Q189569","display_name":"Basis (linear algebra)","level":2,"score":0.6225754022598267},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5546197891235352},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.5175263285636902},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45514988899230957},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.4268012046813965},{"id":"https://openalex.org/C50897621","wikidata":"https://www.wikidata.org/wiki/Q2665508","display_name":"Hybrid system","level":2,"score":0.41646310687065125},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30539804697036743},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20571255683898926},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19111689925193787},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0856061577796936},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-38697-8_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-38697-8_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.716.7227","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.716.7227","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.brunel.ac.uk/%7Ecsstdrg/publications/conferences/petrinets2013.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W14739406","https://openalex.org/W95898642","https://openalex.org/W1544529442","https://openalex.org/W1568573127","https://openalex.org/W1570372094","https://openalex.org/W1786236181","https://openalex.org/W2013336170","https://openalex.org/W2013911710","https://openalex.org/W2043193943","https://openalex.org/W2063465221","https://openalex.org/W2072564350","https://openalex.org/W2078329750","https://openalex.org/W2081368597","https://openalex.org/W2081636121","https://openalex.org/W2093029342","https://openalex.org/W2107563431","https://openalex.org/W2109783775","https://openalex.org/W2114989670","https://openalex.org/W2117728362","https://openalex.org/W2125548279","https://openalex.org/W2131295012","https://openalex.org/W2133552211","https://openalex.org/W2133569473","https://openalex.org/W2148552259","https://openalex.org/W2148895036","https://openalex.org/W2155418451","https://openalex.org/W2158117438","https://openalex.org/W2178536058","https://openalex.org/W2181666329","https://openalex.org/W2489391372","https://openalex.org/W2496242874","https://openalex.org/W2581610748","https://openalex.org/W2737514923","https://openalex.org/W2744090537","https://openalex.org/W2915794166","https://openalex.org/W2944628014","https://openalex.org/W4237493028","https://openalex.org/W4240384253","https://openalex.org/W4249484115"],"related_works":["https://openalex.org/W2154186973","https://openalex.org/W3141886660","https://openalex.org/W2096394343","https://openalex.org/W2160484882","https://openalex.org/W105399774","https://openalex.org/W3012529106","https://openalex.org/W1579275490","https://openalex.org/W16112621","https://openalex.org/W67242188","https://openalex.org/W1965369258"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
