{"id":"https://openalex.org/W171367764","doi":"https://doi.org/10.1007/978-3-642-38317-5_5","title":"Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data","display_name":"Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W171367764","doi":"https://doi.org/10.1007/978-3-642-38317-5_5","mag":"171367764"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-38317-5_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-38317-5_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082641159","display_name":"Adrien Coulet","orcid":"https://orcid.org/0000-0002-1466-062X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Adrien Coulet","raw_affiliation_strings":["LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503), BP 239, F-54506, Vandoeuvre-l\u00e8s-Nancy, France","LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503), BP 239, F-54506, Vandoeuvre-l\u00e8s-Nancy, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210121838","https://openalex.org/I90183372"]},{"raw_affiliation_string":"LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503)","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I90183372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053646333","display_name":"Florent Domenach","orcid":"https://orcid.org/0009-0004-9706-1113"},"institutions":[{"id":"https://openalex.org/I17389662","display_name":"University of Nicosia","ror":"https://ror.org/04v18t651","country_code":"CY","type":"education","lineage":["https://openalex.org/I17389662"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Florent Domenach","raw_affiliation_strings":["Computer Science Department, University of Nicosia, 46 Makedonitissas Av., P.O. Box 24005, 1700, Nicosia, Cyprus","University of Nicosia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Nicosia, 46 Makedonitissas Av., P.O. Box 24005, 1700, Nicosia, Cyprus","institution_ids":["https://openalex.org/I17389662"]},{"raw_affiliation_string":"University of Nicosia","institution_ids":["https://openalex.org/I17389662"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057395190","display_name":"Mehdi Kaytoue","orcid":"https://orcid.org/0000-0002-1569-5242"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I203339264","display_name":"Universit\u00e9 de Lyon","ror":"https://ror.org/01rk35k63","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210155607","display_name":"Laboratoire d'Informatique en Images et Syst\u00e8mes d'Information","ror":"https://ror.org/04dv4he91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210155607","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mehdi Kaytoue","raw_affiliation_strings":["CNRS, INSA-Lyon, LIRIS, UMR5205, Universit\u00e9 de Lyon, F-69621, France","Universit\u00e9 de Lyon"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, INSA-Lyon, LIRIS, UMR5205, Universit\u00e9 de Lyon, F-69621, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210155607"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon","institution_ids":["https://openalex.org/I203339264"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026515643","display_name":"Amedeo Napoli","orcid":"https://orcid.org/0000-0001-5236-9561"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Amedeo Napoli","raw_affiliation_strings":["LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503), BP 239, F-54506, Vandoeuvre-l\u00e8s-Nancy, France","LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503), BP 239, F-54506, Vandoeuvre-l\u00e8s-Nancy, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210121838","https://openalex.org/I90183372"]},{"raw_affiliation_string":"LORIA (Universit\u00e9 de Lorraine \u2013 CNRS \u2013 Inria Nancy Grand Est, UMR 7503)","institution_ids":["https://openalex.org/I4210121838","https://openalex.org/I90183372"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"76","last_page":"91"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8387854099273682},{"id":"https://openalex.org/keywords/formal-concept-analysis","display_name":"Formal concept analysis","score":0.7021807432174683},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6205167174339294},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5117871165275574},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48969724774360657},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4736897945404053},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.4716548025608063},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4448334872722626},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4416022300720215},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42556676268577576},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4177089035511017},{"id":"https://openalex.org/keywords/binary-relation","display_name":"Binary relation","score":0.41446182131767273},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29298412799835205},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.27303802967071533},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.11385312676429749},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10868200659751892}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8387854099273682},{"id":"https://openalex.org/C76363472","wikidata":"https://www.wikidata.org/wiki/Q1437394","display_name":"Formal concept analysis","level":2,"score":0.7021807432174683},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6205167174339294},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5117871165275574},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48969724774360657},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4736897945404053},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.4716548025608063},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4448334872722626},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4416022300720215},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42556676268577576},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4177089035511017},{"id":"https://openalex.org/C65180967","wikidata":"https://www.wikidata.org/wiki/Q130901","display_name":"Binary relation","level":2,"score":0.41446182131767273},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29298412799835205},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.27303802967071533},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.11385312676429749},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10868200659751892},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-38317-5_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-38317-5_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W62327733","https://openalex.org/W135588552","https://openalex.org/W1503729935","https://openalex.org/W1536607724","https://openalex.org/W1555563750","https://openalex.org/W1605329062","https://openalex.org/W1852340955","https://openalex.org/W1937923414","https://openalex.org/W2047142510","https://openalex.org/W2054542377","https://openalex.org/W2074310030","https://openalex.org/W2084168100","https://openalex.org/W2087779040","https://openalex.org/W2091729411","https://openalex.org/W2115393608","https://openalex.org/W2123152121","https://openalex.org/W2137052779","https://openalex.org/W2145770068","https://openalex.org/W2157272674","https://openalex.org/W2159583324","https://openalex.org/W2396903734","https://openalex.org/W2511257128","https://openalex.org/W4255318870","https://openalex.org/W4300129298","https://openalex.org/W4300703193","https://openalex.org/W6912992434"],"related_works":["https://openalex.org/W2891818416","https://openalex.org/W2602662326","https://openalex.org/W2350086179","https://openalex.org/W2594350118","https://openalex.org/W1684222254","https://openalex.org/W2301546526","https://openalex.org/W2408706506","https://openalex.org/W77161","https://openalex.org/W2103222807","https://openalex.org/W2090935781"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
