{"id":"https://openalex.org/W202784691","doi":"https://doi.org/10.1007/978-3-642-38036-5_25","title":"POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria","display_name":"POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W202784691","doi":"https://doi.org/10.1007/978-3-642-38036-5_25","mag":"202784691"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-38036-5_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-38036-5_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066462242","display_name":"Nicolas Wieseke","orcid":null},"institutions":[{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Nicolas Wieseke","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, University of Leipzig, Augustusplatz 10, 04109, Leipzig, Germany","University of Leipzig"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, University of Leipzig, Augustusplatz 10, 04109, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I147765834"]},{"raw_affiliation_string":"University of Leipzig","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020497562","display_name":"Marcus Lechner","orcid":"https://orcid.org/0000-0001-9098-4960"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcus Lechner","raw_affiliation_strings":["Institut f\u00fcr Pharmazeutische Chemie, Philipps-Universit\u00e4t Marburg, Marbacher Weg 6, 35032, Marburg, Germany","Philipps-Universit\u00e4t Marburg"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Pharmazeutische Chemie, Philipps-Universit\u00e4t Marburg, Marbacher Weg 6, 35032, Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]},{"raw_affiliation_string":"Philipps-Universit\u00e4t Marburg","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086323965","display_name":"Marcus Ludwig","orcid":"https://orcid.org/0000-0001-9981-2153"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcus Ludwig","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany","Friedrich-Schiller University Jena"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Friedrich-Schiller University Jena","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041475009","display_name":"Manja Marz","orcid":"https://orcid.org/0000-0003-4783-8823"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Manja Marz","raw_affiliation_strings":["Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany","Friedrich-Schiller University Jena"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, Leutragraben 1, 07743, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Friedrich-Schiller University Jena","institution_ids":["https://openalex.org/I76198965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066462242"],"corresponding_institution_ids":["https://openalex.org/I147765834","https://openalex.org/I926574661"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.1603,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.79375926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"249","last_page":"260"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7360935211181641},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7064836025238037},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.6769300699234009},{"id":"https://openalex.org/keywords/intergenic-region","display_name":"Intergenic region","score":0.5826123356819153},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5563720464706421},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5433415174484253},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5119613409042358},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4928295910358429},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.49200841784477234},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4255814552307129},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3804927468299866},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.07644709944725037}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7360935211181641},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7064836025238037},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.6769300699234009},{"id":"https://openalex.org/C195139083","wikidata":"https://www.wikidata.org/wiki/Q3463539","display_name":"Intergenic region","level":4,"score":0.5826123356819153},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5563720464706421},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5433415174484253},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5119613409042358},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4928295910358429},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.49200841784477234},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4255814552307129},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3804927468299866},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.07644709944725037}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-38036-5_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-38036-5_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W121384242","https://openalex.org/W1482360569","https://openalex.org/W1605441808","https://openalex.org/W1627698625","https://openalex.org/W1964549499","https://openalex.org/W1979835060","https://openalex.org/W2007135806","https://openalex.org/W2015502807","https://openalex.org/W2041257508","https://openalex.org/W2055043387","https://openalex.org/W2066756462","https://openalex.org/W2095824228","https://openalex.org/W2112132489","https://openalex.org/W2122865985","https://openalex.org/W2134153749","https://openalex.org/W2137015675","https://openalex.org/W2139317640","https://openalex.org/W2140293413","https://openalex.org/W2155858493","https://openalex.org/W2156908119","https://openalex.org/W2157907940","https://openalex.org/W2159266221","https://openalex.org/W2164786886"],"related_works":["https://openalex.org/W2119649249","https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2982006786","https://openalex.org/W1526689651","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038"],"abstract_inverted_index":null,"counts_by_year":[{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
