{"id":"https://openalex.org/W2165656791","doi":"https://doi.org/10.1007/978-3-642-35606-3_2","title":"DGraph: Algorithms for Shortgun Reads Assembly Using De Bruijn Graph","display_name":"DGraph: Algorithms for Shortgun Reads Assembly Using De Bruijn Graph","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2165656791","doi":"https://doi.org/10.1007/978-3-642-35606-3_2","mag":"2165656791"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-35606-3_2","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-35606-3_2","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-35606-3_2.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-35606-3_2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056275783","display_name":"Jintao Meng","orcid":"https://orcid.org/0000-0002-6208-4102"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jintao Meng","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences, Beijing, China","Institute of Computing Technology, CAS, Beijing, P.R. China","Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, CAS, Beijing, P.R. China","institution_ids":["https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China","institution_ids":["https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031040787","display_name":"Jianrui Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianrui Yuan","raw_affiliation_strings":["Central South University, Changsha, P.R. China","Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, P.R. China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China","institution_ids":["https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103340525","display_name":"Jiefeng Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiefeng Cheng","raw_affiliation_strings":["Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China","institution_ids":["https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China","institution_ids":["https://openalex.org/I4210145761"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101952645","display_name":"Shengzhong Feng","orcid":"https://orcid.org/0000-0002-6225-2815"},"institutions":[{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengzhong Feng","raw_affiliation_strings":["Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology, CAS, Shenzhen, P.R. China","institution_ids":["https://openalex.org/I4210145761"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"14","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.8248233795166016},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.7053338885307312},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.6355502605438232},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6202998161315918},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5917609930038452},{"id":"https://openalex.org/keywords/eulerian-path","display_name":"Eulerian path","score":0.5467599034309387},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4463983178138733},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4175889790058136},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4159727692604065},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3887476623058319},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33339256048202515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24475380778312683},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21852242946624756},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16529157757759094},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11732032895088196},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.09257519245147705},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08218792080879211}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.8248233795166016},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.7053338885307312},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.6355502605438232},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6202998161315918},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5917609930038452},{"id":"https://openalex.org/C43058520","wikidata":"https://www.wikidata.org/wiki/Q624580","display_name":"Eulerian path","level":3,"score":0.5467599034309387},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4463983178138733},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4175889790058136},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4159727692604065},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3887476623058319},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33339256048202515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24475380778312683},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21852242946624756},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16529157757759094},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11732032895088196},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.09257519245147705},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08218792080879211},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C53469067","wikidata":"https://www.wikidata.org/wiki/Q505735","display_name":"Lagrangian","level":2,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-35606-3_2","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-35606-3_2","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-35606-3_2.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-01551353v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01551353","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"9th International Conference on Network and Parallel Computing (NPC), Sep 2012, Gwangju, South Korea. pp.14-21, &#x27E8;10.1007/978-3-642-35606-3_2&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-35606-3_2","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-35606-3_2","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-35606-3_2.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6459305495","display_name":"\u767e\u4e07\u89c4\u6a21\u4e0d\u786e\u5b9a\u56fe\u6570\u636e\u7684\u5feb\u901f\u67e5\u8be2\u6280\u672f\u7814\u7a76","funder_award_id":"61103049","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165656791.pdf","grobid_xml":"https://content.openalex.org/works/W2165656791.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2022910024","https://openalex.org/W2035898576","https://openalex.org/W2037794798","https://openalex.org/W2063131041","https://openalex.org/W2088084599","https://openalex.org/W2094019194","https://openalex.org/W2107233609","https://openalex.org/W2128114769","https://openalex.org/W2159497035","https://openalex.org/W2160969485","https://openalex.org/W2166265186","https://openalex.org/W2171475724","https://openalex.org/W4232500889"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W2119121014","https://openalex.org/W4387083702","https://openalex.org/W2141920662","https://openalex.org/W2991626973","https://openalex.org/W2105191441","https://openalex.org/W4318940746","https://openalex.org/W3216228911","https://openalex.org/W2131813051","https://openalex.org/W2133531097"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
