{"id":"https://openalex.org/W2119410807","doi":"https://doi.org/10.1007/978-3-642-34123-6_22","title":"Aligning Discovered Patterns from Protein Family Sequences","display_name":"Aligning Discovered Patterns from Protein Family Sequences","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2119410807","doi":"https://doi.org/10.1007/978-3-642-34123-6_22","mag":"2119410807"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-34123-6_22","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-34123-6_22","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-34123-6_22.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-34123-6_22.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054354683","display_name":"En-Shiun Annie Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"En-Shiun Annie Lee","raw_affiliation_strings":["Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1, Canada","Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, Waterloo, Ontario, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, Waterloo, Ontario, Canada#TAB#","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072016362","display_name":"Dennis Zhuang","orcid":null},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dennis Zhuang","raw_affiliation_strings":["Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1, Canada","Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, Waterloo, Ontario, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, Waterloo, Ontario, Canada#TAB#","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051841038","display_name":"Andrew K. C. Wong","orcid":"https://orcid.org/0000-0002-0019-7152"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew K. C. Wong","raw_affiliation_strings":["Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1, Canada","Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, Waterloo, Ontario, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Centre of Pattern Analysis and Machine Intelligence, University of Waterloo, Waterloo, Ontario, Canada#TAB#","institution_ids":["https://openalex.org/I151746483"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12571311,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"243","last_page":"254"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6834135055541992},{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.6770055890083313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6637089252471924},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5155229568481445},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4677671790122986},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4659717082977295},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.45459914207458496},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.44689422845840454},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43469518423080444},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.43405598402023315},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4286203682422638},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32505089044570923},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32439756393432617},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2935076951980591},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.23620709776878357},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23604264855384827},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1651838719844818}],"concepts":[{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6834135055541992},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.6770055890083313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6637089252471924},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5155229568481445},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4677671790122986},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4659717082977295},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.45459914207458496},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.44689422845840454},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43469518423080444},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.43405598402023315},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4286203682422638},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32505089044570923},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32439756393432617},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2935076951980591},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.23620709776878357},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23604264855384827},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1651838719844818},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-34123-6_22","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-34123-6_22","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-34123-6_22.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-34123-6_22","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-34123-6_22","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-34123-6_22.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119410807.pdf","grobid_xml":"https://content.openalex.org/works/W2119410807.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1971145588","https://openalex.org/W1974771527","https://openalex.org/W2002638840","https://openalex.org/W2009570821","https://openalex.org/W2044438398","https://openalex.org/W2056002855","https://openalex.org/W2080553628","https://openalex.org/W2101090646","https://openalex.org/W2106882534","https://openalex.org/W2129448726","https://openalex.org/W2131079894","https://openalex.org/W2141224484","https://openalex.org/W2141885858","https://openalex.org/W2143357251","https://openalex.org/W2144362290","https://openalex.org/W2155744824","https://openalex.org/W2156899368","https://openalex.org/W2345196156","https://openalex.org/W2423046776","https://openalex.org/W4210623056","https://openalex.org/W4245668478","https://openalex.org/W4247074653","https://openalex.org/W4255447217"],"related_works":["https://openalex.org/W2159663778","https://openalex.org/W2065993463","https://openalex.org/W2181899571","https://openalex.org/W2135470984","https://openalex.org/W2082535576","https://openalex.org/W1568877569","https://openalex.org/W2108768153","https://openalex.org/W2015809665","https://openalex.org/W2935275081","https://openalex.org/W2111105050"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
