{"id":"https://openalex.org/W56145055","doi":"https://doi.org/10.1007/978-3-642-34032-1_3","title":"Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein","display_name":"Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W56145055","doi":"https://doi.org/10.1007/978-3-642-34032-1_3","mag":"56145055"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-34032-1_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-34032-1_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053770566","display_name":"Hernando Sanchez-Faddeev","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Hernando Sanchez-Faddeev","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007378438","display_name":"Michael Emmerich","orcid":"https://orcid.org/0000-0002-7342-2090"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michael T. M. Emmerich","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022631255","display_name":"Fons J. Verbeek","orcid":"https://orcid.org/0000-0003-2445-8158"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Fons J. Verbeek","raw_affiliation_strings":["Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden Institute of Advanced Computer Science, Leiden University, Niels Bohrweg 1, 2333 CA, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110146291","display_name":"Andrew Henry","orcid":null},"institutions":[{"id":"https://openalex.org/I2801542208","display_name":"TeraView (United Kingdom)","ror":"https://ror.org/00q0dz713","country_code":"GB","type":"company","lineage":["https://openalex.org/I2801542208"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew H. Henry","raw_affiliation_strings":["Chemical Computing Group, St John\u2019s Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom","Chemical Computing Group, St John's Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Chemical Computing Group, St John\u2019s Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom","institution_ids":["https://openalex.org/I2801542208"]},{"raw_affiliation_string":"Chemical Computing Group, St John's Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007260827","display_name":"Simon Grimshaw","orcid":null},"institutions":[{"id":"https://openalex.org/I2801542208","display_name":"TeraView (United Kingdom)","ror":"https://ror.org/00q0dz713","country_code":"GB","type":"company","lineage":["https://openalex.org/I2801542208"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Grimshaw","raw_affiliation_strings":["Chemical Computing Group, St John\u2019s Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom","Chemical Computing Group, St John's Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Chemical Computing Group, St John\u2019s Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom","institution_ids":["https://openalex.org/I2801542208"]},{"raw_affiliation_string":"Chemical Computing Group, St John's Innovation Centre, Cowley Road, Cambridge, CB40WS, United Kingdom","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079226834","display_name":"Herman P. Spaink","orcid":"https://orcid.org/0000-0003-4128-9501"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Herman P. Spaink","raw_affiliation_strings":["Institute of Biology, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016006548","display_name":"Herman W. van Vlijmen","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Herman W. van Vlijmen","raw_affiliation_strings":["Medicinal Chemistry Division, Leiden / Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry Division, Leiden / Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026643759","display_name":"Andreas Bender","orcid":"https://orcid.org/0000-0002-6683-7546"},"institutions":[{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]},{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andreas Bender","raw_affiliation_strings":["Medicinal Chemistry Division, Leiden / Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medicinal Chemistry Division, Leiden / Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5053770566"],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.6153,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.8432913,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"12","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13526","display_name":"14-3-3 protein interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13526","display_name":"14-3-3 protein interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.613162100315094},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.6070468425750732},{"id":"https://openalex.org/keywords/multi-objective-optimization","display_name":"Multi-objective optimization","score":0.5594731569290161},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.44641292095184326},{"id":"https://openalex.org/keywords/protein-design","display_name":"Protein design","score":0.4417073428630829},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2664094567298889},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19425645470619202},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.1832672357559204},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.10196852684020996},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08312863111495972}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.613162100315094},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.6070468425750732},{"id":"https://openalex.org/C68781425","wikidata":"https://www.wikidata.org/wiki/Q2052203","display_name":"Multi-objective optimization","level":2,"score":0.5594731569290161},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.44641292095184326},{"id":"https://openalex.org/C152769699","wikidata":"https://www.wikidata.org/wiki/Q410814","display_name":"Protein design","level":3,"score":0.4417073428630829},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2664094567298889},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19425645470619202},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.1832672357559204},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.10196852684020996},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08312863111495972},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-34032-1_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-34032-1_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3655521","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/3655521","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lecture Notes in Computer Science -- Leveraging applications of formal methods, verification and validation. applications and case studies (ISoLA 2012)","raw_type":"Article in monograph or in proceedings"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8299999833106995,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W96040198","https://openalex.org/W397102730","https://openalex.org/W1486212524","https://openalex.org/W1525375343","https://openalex.org/W1573534773","https://openalex.org/W1595498733","https://openalex.org/W1866856384","https://openalex.org/W1886554846","https://openalex.org/W1969586412","https://openalex.org/W1970424517","https://openalex.org/W1979022034","https://openalex.org/W1982131304","https://openalex.org/W1985820931","https://openalex.org/W1988056514","https://openalex.org/W1995160625","https://openalex.org/W2006690368","https://openalex.org/W2011883284","https://openalex.org/W2016269899","https://openalex.org/W2022749124","https://openalex.org/W2027478081","https://openalex.org/W2038420231","https://openalex.org/W2040135138","https://openalex.org/W2040225778","https://openalex.org/W2067643341","https://openalex.org/W2068271330","https://openalex.org/W2075561696","https://openalex.org/W2088495902","https://openalex.org/W2098761867","https://openalex.org/W2104609471","https://openalex.org/W2107411326","https://openalex.org/W2109640287","https://openalex.org/W2115676087","https://openalex.org/W2118904736","https://openalex.org/W2122772601","https://openalex.org/W2132010529","https://openalex.org/W2137702546","https://openalex.org/W2161301304","https://openalex.org/W2210195496","https://openalex.org/W2261715050","https://openalex.org/W2475481088","https://openalex.org/W4234954171","https://openalex.org/W4300919558","https://openalex.org/W6605554985"],"related_works":["https://openalex.org/W4318426920","https://openalex.org/W2055791821","https://openalex.org/W2153873031","https://openalex.org/W570431388","https://openalex.org/W2637862190","https://openalex.org/W2611723089","https://openalex.org/W2337862504","https://openalex.org/W3082547637","https://openalex.org/W1994436307","https://openalex.org/W2164920121"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}