{"id":"https://openalex.org/W2464023877","doi":"https://doi.org/10.1007/978-3-642-33412-2_61","title":"GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures","display_name":"GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2464023877","doi":"https://doi.org/10.1007/978-3-642-33412-2_61","mag":"2464023877"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-33412-2_61","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-33412-2_61","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-33412-2_61.pdf","source":{"id":"https://openalex.org/S4210175514","display_name":"IFIP International Federation for Information Processing/IFIP","issn_l":"1571-5736","issn":["1571-5736","1861-2288"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IFIP Advances in Information and Communication Technology","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-33412-2_61.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024578874","display_name":"Tom\u00e1\u0161 Flouri","orcid":"https://orcid.org/0000-0002-8474-9507"},"institutions":[{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Flouri","raw_affiliation_strings":["Heidelberg Institute for Theoretical Studies, Germany","HITS  - Heidelberg Institute for Theoretical Studies (D-69118 Heidelberg Germany - Germany)"],"affiliations":[{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"HITS  - Heidelberg Institute for Theoretical Studies (D-69118 Heidelberg Germany - Germany)","institution_ids":["https://openalex.org/I71030271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058155947","display_name":"Costas S. Iliopoulos","orcid":"https://orcid.org/0000-0003-3909-0077"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I177877127","display_name":"University of Western Australia","ror":"https://ror.org/047272k79","country_code":"AU","type":"education","lineage":["https://openalex.org/I177877127"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Costas S. Iliopoulos","raw_affiliation_strings":["Dept. of Informatics, King\u2019s College London, UK","Dept. of Mathematics & Statistics, University of Western Australia, Australia","Department of Informatics [King's College London] (United Kingdom)","UWA - The University of Western Australia (35 Stirling Highway\r\nPerth WA 6009 Australia - Australia)"],"affiliations":[{"raw_affiliation_string":"Dept. of Informatics, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Dept. of Mathematics & Statistics, University of Western Australia, Australia","institution_ids":["https://openalex.org/I177877127"]},{"raw_affiliation_string":"Department of Informatics [King's College London] (United Kingdom)","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"UWA - The University of Western Australia (35 Stirling Highway\r\nPerth WA 6009 Australia - Australia)","institution_ids":["https://openalex.org/I177877127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039462502","display_name":"Kunsoo Park","orcid":"https://orcid.org/0000-0001-5225-0907"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kunsoo Park","raw_affiliation_strings":["School of Computer Science and Engineering, Seoul National University, South Korea","School of CSE - School of Computer Science and Engineering [Seoul] (School of Computer Science and Engineering, College of Engineering, Seoul National University 599 Kwanak-ro, Gwanak-gu, Seoul 151-742, KOREA - South Korea)"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Seoul National University, South Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"School of CSE - School of Computer Science and Engineering [Seoul] (School of Computer Science and Engineering, College of Engineering, Seoul National University 599 Kwanak-ro, Gwanak-gu, Seoul 151-742, KOREA - South Korea)","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051275317","display_name":"Solon P. Pissis","orcid":"https://orcid.org/0000-0002-1445-1932"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I1313142568","display_name":"Florida Museum of Natural History","ror":"https://ror.org/02pjdv450","country_code":"US","type":"archive","lineage":["https://openalex.org/I1313142568","https://openalex.org/I33213144"]},{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Solon P. Pissis","raw_affiliation_strings":["Florida Museum of Natural History, University of Florida, USA","Heidelberg Institute for Theoretical Studies, Germany","Florida Museum of Natural History (United States)","HITS  - Heidelberg Institute for Theoretical Studies (D-69118 Heidelberg Germany - Germany)"],"affiliations":[{"raw_affiliation_string":"Florida Museum of Natural History, University of Florida, USA","institution_ids":["https://openalex.org/I1313142568","https://openalex.org/I33213144"]},{"raw_affiliation_string":"Heidelberg Institute for Theoretical Studies, Germany","institution_ids":["https://openalex.org/I71030271"]},{"raw_affiliation_string":"Florida Museum of Natural History (United States)","institution_ids":["https://openalex.org/I1313142568"]},{"raw_affiliation_string":"HITS  - Heidelberg Institute for Theoretical Studies (D-69118 Heidelberg Germany - Germany)","institution_ids":["https://openalex.org/I71030271"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024578874"],"corresponding_institution_ids":["https://openalex.org/I71030271"],"apc_list":null,"apc_paid":null,"fwci":2.1545,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.89821883,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"593","last_page":"601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.8448747992515564},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6541550159454346},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.6403127908706665},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6255613565444946},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6073156595230103},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.6053193211555481},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.530517041683197},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4535452425479889},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.4411028027534485},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34379148483276367},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.27408984303474426},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20485562086105347},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19982120394706726},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1515621840953827},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0908433198928833},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08351945877075195},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.06988748908042908}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.8448747992515564},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6541550159454346},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.6403127908706665},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6255613565444946},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6073156595230103},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.6053193211555481},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.530517041683197},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4535452425479889},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.4411028027534485},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34379148483276367},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.27408984303474426},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20485562086105347},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19982120394706726},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1515621840953827},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0908433198928833},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08351945877075195},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.06988748908042908},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-642-33412-2_61","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-33412-2_61","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-33412-2_61.pdf","source":{"id":"https://openalex.org/S4210175514","display_name":"IFIP International Federation for Information Processing/IFIP","issn_l":"1571-5736","issn":["1571-5736","1861-2288"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IFIP Advances in Information and Communication Technology","raw_type":"book-chapter"},{"id":"pmh:oai:pure.atira.dk:publications/3bea0aba-ecbe-403b-aabe-57220d5fb3d3","is_oa":false,"landing_page_url":"https://research-repository.uwa.edu.au/en/publications/3bea0aba-ecbe-403b-aabe-57220d5fb3d3","pdf_url":null,"source":{"id":"https://openalex.org/S4306402523","display_name":"UWA Profiles and Research Repository (University of Western Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177877127","host_organization_name":"The University of Western Australia","host_organization_lineage":["https://openalex.org/I177877127"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Flouri , T , Iliopoulos , C , Park , K &amp; Pissis , S P 2012 , GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures . in Artificial Intelligence Applications and Innovations . vol. IFIP AICT 382 , Springer , Heidelberg , pp. 593-601 , AIAI 2012 IFIP International Conference on Artificial Intelligence Applications and Innovations , Halkidiki , Greece , 27/09/12 . https://doi.org/10.1007/978-3-642-33412-2_61","raw_type":"contributionToPeriodical"},{"id":"pmh:oai:HAL:hal-01523065v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01523065","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"8th International Conference on Artificial Intelligence Applications and Innovations (AIAI), Sep 2012, Halkidiki, Greece. pp.593-601, &#x27E8;10.1007/978-3-642-33412-2_61&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/36f4e323-b980-4627-ad04-0be67f7874c2","is_oa":false,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/36f4e323-b980-4627-ad04-0be67f7874c2","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Flouri , T , Iliopoulos , C S , Park , K &amp; Pissis , S P 2012 , GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures . in L Iliadis , I Maglogiannis , H Papadopoulos , K Karatzas &amp; S Sioutas (eds) , Artificial Intelligence Applications and Innovations : AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB, Halkidiki, Greece, September 27-30, 2012, Proceedings, Part II . vol. 382 , IFIP Advances in Information and Communication Technology , vol. 382 , pp. 593-601 . https://doi.org/10.1007/978-3-642-33412-2_61","raw_type":"contributionToPeriodical"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-33412-2_61","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-33412-2_61","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-642-33412-2_61.pdf","source":{"id":"https://openalex.org/S4210175514","display_name":"IFIP International Federation for Information Processing/IFIP","issn_l":"1571-5736","issn":["1571-5736","1861-2288"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IFIP Advances in Information and Communication Technology","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G4345379830","display_name":null,"funder_award_id":"735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6124298671","display_name":null,"funder_award_id":"0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G694679094","display_name":null,"funder_award_id":"DBI-0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2464023877.pdf","grobid_xml":"https://content.openalex.org/works/W2464023877.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1965674378","https://openalex.org/W1973878786","https://openalex.org/W1996423252","https://openalex.org/W2011339623","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2097341408","https://openalex.org/W2124985265","https://openalex.org/W2168401659"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2133116680","https://openalex.org/W2111937814","https://openalex.org/W2141411672","https://openalex.org/W2091678889","https://openalex.org/W1482324242","https://openalex.org/W187239587","https://openalex.org/W2730968108","https://openalex.org/W2129361631","https://openalex.org/W2079145549"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
