{"id":"https://openalex.org/W2179933869","doi":"https://doi.org/10.1007/978-3-642-33122-0_19","title":"Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter","display_name":"Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2179933869","doi":"https://doi.org/10.1007/978-3-642-33122-0_19","mag":"2179933869"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-33122-0_19","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-33122-0_19","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-00753930","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058310668","display_name":"Rayan Chikhi","orcid":"https://orcid.org/0000-0003-1099-8735"},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Rayan Chikhi","raw_affiliation_strings":["Computer Science Department, ENS Cachan/IRISA, Rennes, France","GenScale - Scalable, Optimized and Parallel Algorithms for Genomics (Campus de Beaulieu 35042 Rennes cedex - France)","ENS Cachan Bretagne - \u00c9cole normale sup\u00e9rieure - Cachan, antenne de Bretagne (Campus de Ker Lann - Avenue Robert Schuman - 35170 Bruz - France)"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, ENS Cachan/IRISA, Rennes, France","institution_ids":["https://openalex.org/I11559806","https://openalex.org/I2802519937","https://openalex.org/I4210156583"]},{"raw_affiliation_string":"GenScale - Scalable, Optimized and Parallel Algorithms for Genomics (Campus de Beaulieu 35042 Rennes cedex - France)","institution_ids":[]},{"raw_affiliation_string":"ENS Cachan Bretagne - \u00c9cole normale sup\u00e9rieure - Cachan, antenne de Bretagne (Campus de Ker Lann - Avenue Robert Schuman - 35170 Bruz - France)","institution_ids":["https://openalex.org/I11559806"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070626642","display_name":"Guillaume Rizk","orcid":"https://orcid.org/0000-0002-1642-2625"},"institutions":[{"id":"https://openalex.org/I4210099593","display_name":"Computer Algorithms for Medicine","ror":"https://ror.org/00zky6d38","country_code":"AT","type":"facility","lineage":["https://openalex.org/I4210099593"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Guillaume Rizk","raw_affiliation_strings":["Algorizk, Paris, France","Algorizk [Paris] (22 Avenue de Choisy 75013 Paris - France)"],"affiliations":[{"raw_affiliation_string":"Algorizk, Paris, France","institution_ids":["https://openalex.org/I4210099593"]},{"raw_affiliation_string":"Algorizk [Paris] (22 Avenue de Choisy 75013 Paris - France)","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5058310668"],"corresponding_institution_ids":["https://openalex.org/I11559806","https://openalex.org/I2802519937","https://openalex.org/I4210156583"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":19.3838,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.99545173,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"236","last_page":"248"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9560999870300293,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.9560425281524658},{"id":"https://openalex.org/keywords/bloom-filter","display_name":"Bloom filter","score":0.9298824071884155},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.7945985794067383},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6158042550086975},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5787785649299622},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.537914514541626},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5339685082435608},{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.5325694680213928},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4882829189300537},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39475497603416443},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32277610898017883},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.30609098076820374},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19767653942108154},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.1878145933151245},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13486090302467346},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09598991274833679}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.9560425281524658},{"id":"https://openalex.org/C147224247","wikidata":"https://www.wikidata.org/wiki/Q885373","display_name":"Bloom filter","level":2,"score":0.9298824071884155},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.7945985794067383},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6158042550086975},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5787785649299622},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.537914514541626},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5339685082435608},{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.5325694680213928},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4882829189300537},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39475497603416443},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32277610898017883},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30609098076820374},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19767653942108154},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.1878145933151245},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13486090302467346},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09598991274833679}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-33122-0_19","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-33122-0_19","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:hal-00753930v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00753930","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"WABI 2012, Sep 2012, Ljubljana, Slovenia. pp 236-248, ⟨10.1007/978-3-642-33122-0_19⟩","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-00753930v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00753930","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"WABI 2012, Sep 2012, Ljubljana, Slovenia. pp 236-248, ⟨10.1007/978-3-642-33122-0_19⟩","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W30658801","https://openalex.org/W1532744586","https://openalex.org/W1966822396","https://openalex.org/W1972924519","https://openalex.org/W2009119978","https://openalex.org/W2010361633","https://openalex.org/W2022910024","https://openalex.org/W2047665315","https://openalex.org/W2057253402","https://openalex.org/W2069074882","https://openalex.org/W2096128575","https://openalex.org/W2103635790","https://openalex.org/W2113915152","https://openalex.org/W2126419817","https://openalex.org/W2127768708","https://openalex.org/W2128524432","https://openalex.org/W2133531097","https://openalex.org/W2151674273","https://openalex.org/W2153124929","https://openalex.org/W2156660460","https://openalex.org/W2161546116","https://openalex.org/W2163830511"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W3125399386","https://openalex.org/W2354744388","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W2756186577","https://openalex.org/W2735897904","https://openalex.org/W1908987670","https://openalex.org/W2179933869"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":11}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}