{"id":"https://openalex.org/W1941139196","doi":"https://doi.org/10.1007/978-3-642-32208-2_10","title":"DNA Self-Assembly and Computation Studied with a Coarse-Grained Dynamic Bonded Model","display_name":"DNA Self-Assembly and Computation Studied with a Coarse-Grained Dynamic Bonded Model","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W1941139196","doi":"https://doi.org/10.1007/978-3-642-32208-2_10","mag":"1941139196"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-32208-2_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-32208-2_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1204.0733","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006709697","display_name":"Carsten Svaneborg","orcid":"https://orcid.org/0000-0003-4301-3365"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Carsten Svaneborg","raw_affiliation_strings":["Center for Fundamental Living Technology, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5320, Odense, Denmark","[University of Southern Denmark]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Fundamental Living Technology, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5320, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"[University of Southern Denmark]","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055847229","display_name":"Harold Fellermann","orcid":"https://orcid.org/0000-0001-5861-1945"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["DK","ES"],"is_corresponding":false,"raw_author_name":"Harold Fellermann","raw_affiliation_strings":["Center for Fundamental Living Technology, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5320, Odense, Denmark","Complex Systems Lab., Barcelona Biomedical Research Park, Universitat Pompeu Fabra, Dr. Aiguad\u00e9 88, 08003, Barcelona, Spain","University of Southern Denmark","Universitat Pompeu Fabra"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Fundamental Living Technology, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5320, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Complex Systems Lab., Barcelona Biomedical Research Park, Universitat Pompeu Fabra, Dr. Aiguad\u00e9 88, 08003, Barcelona, Spain","institution_ids":["https://openalex.org/I2801864671"]},{"raw_affiliation_string":"University of Southern Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Universitat Pompeu Fabra","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088930078","display_name":"Steen Rasmussen","orcid":"https://orcid.org/0000-0002-3336-843X"},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Steen Rasmussen","raw_affiliation_strings":["Center for Fundamental Living Technology, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5320, Odense, Denmark","Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM, 87501, USA","Santa Fe Institute","University of Southern Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Fundamental Living Technology, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5320, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM, 87501, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Santa Fe Institute","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"University of Southern Denmark","institution_ids":["https://openalex.org/I177969490"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12207025,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"123","last_page":"134"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.7264695763587952},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6467567682266235},{"id":"https://openalex.org/keywords/tetrahedron","display_name":"Tetrahedron","score":0.545179545879364},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5272195339202881},{"id":"https://openalex.org/keywords/dihedral-angle","display_name":"Dihedral angle","score":0.5220558643341064},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.35986971855163574},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3506385087966919},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.33036381006240845},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.32562947273254395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28546786308288574},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22730767726898193},{"id":"https://openalex.org/keywords/hydrogen-bond","display_name":"Hydrogen bond","score":0.20827940106391907},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.18815508484840393},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1359058916568756},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.11304923892021179},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.07260867953300476}],"concepts":[{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.7264695763587952},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6467567682266235},{"id":"https://openalex.org/C105239961","wikidata":"https://www.wikidata.org/wiki/Q160003","display_name":"Tetrahedron","level":2,"score":0.545179545879364},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5272195339202881},{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.5220558643341064},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35986971855163574},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3506385087966919},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.33036381006240845},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.32562947273254395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28546786308288574},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22730767726898193},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.20827940106391907},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.18815508484840393},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1359058916568756},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.11304923892021179},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.07260867953300476},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1007/978-3-642-32208-2_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-32208-2_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:arXiv.org:1204.0733","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1204.0733","pdf_url":"https://arxiv.org/pdf/1204.0733","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:sdu.dk:publications/49d69ce2-f56d-422c-95c1-22dfb0a27462","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/49d69ce2-f56d-422c-95c1-22dfb0a27462","pdf_url":"https://arxiv.org/pdf/1204.0733.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Svaneborg , C , Fellermann , H & Rasmussen , S 2012 , DNA Self-Assembly and Computation Studied with a Coarse-grained Dynamic Bonded Model . in DNA Computing and Molecular Programming . Springer , Lecture Notes in Computer Science , vol. 7433 , pp. 123-134 , International Conference on DNA Computing and Molecular Programming , \u00c5rhus , Denmark , 14/08/2012 . https://doi.org/10.1007/978-3-642-32208-2_10","raw_type":null},{"id":"mag:1941139196","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1204.0733","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.749.6601","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.749.6601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1204.0733.pdf","raw_type":"text"},{"id":"doi:10.48550/arxiv.1204.0733","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1204.0733","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1204.0733","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1204.0733","pdf_url":"https://arxiv.org/pdf/1204.0733","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1567090568","https://openalex.org/W1964928696","https://openalex.org/W1967280119","https://openalex.org/W1974114013","https://openalex.org/W1977312644","https://openalex.org/W1980301976","https://openalex.org/W1983498030","https://openalex.org/W1991060977","https://openalex.org/W2003422946","https://openalex.org/W2014507174","https://openalex.org/W2019465613","https://openalex.org/W2023747155","https://openalex.org/W2024949907","https://openalex.org/W2030303368","https://openalex.org/W2038125628","https://openalex.org/W2040830330","https://openalex.org/W2047231556","https://openalex.org/W2050103377","https://openalex.org/W2051999592","https://openalex.org/W2052329232","https://openalex.org/W2054318409","https://openalex.org/W2058898182","https://openalex.org/W2061919469","https://openalex.org/W2065728036","https://openalex.org/W2065996552","https://openalex.org/W2075031385","https://openalex.org/W2089588871","https://openalex.org/W2095145098","https://openalex.org/W2103409481","https://openalex.org/W2110758176","https://openalex.org/W2112333437","https://openalex.org/W2126961173","https://openalex.org/W2145003564","https://openalex.org/W2158313010","https://openalex.org/W4245990262"],"related_works":["https://openalex.org/W1908709458","https://openalex.org/W2606377251","https://openalex.org/W2584646156","https://openalex.org/W2908598524","https://openalex.org/W2971404972","https://openalex.org/W1568631168","https://openalex.org/W2550955956","https://openalex.org/W2810161464","https://openalex.org/W3103538338","https://openalex.org/W2023896219","https://openalex.org/W2148684150","https://openalex.org/W2758729809","https://openalex.org/W2974974557","https://openalex.org/W2076783954","https://openalex.org/W2089468843","https://openalex.org/W1963687225","https://openalex.org/W3098992615","https://openalex.org/W2110438477","https://openalex.org/W2024231457","https://openalex.org/W2072446486"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}