{"id":"https://openalex.org/W15476667","doi":"https://doi.org/10.1007/978-3-642-31927-3_10","title":"Prediction of Transcription Factor Binding Sites by Integrating DNase Digestion and Histone Modification","display_name":"Prediction of Transcription Factor Binding Sites by Integrating DNase Digestion and Histone Modification","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W15476667","doi":"https://doi.org/10.1007/978-3-642-31927-3_10","mag":"15476667"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-31927-3_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-31927-3_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030617406","display_name":"Eduardo Gade Gusmao","orcid":"https://orcid.org/0000-0001-7461-1443"},"institutions":[{"id":"https://openalex.org/I25112270","display_name":"Universidade Federal de Pernambuco","ror":"https://ror.org/047908t24","country_code":"BR","type":"education","lineage":["https://openalex.org/I25112270"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Eduardo G. Gusm\u00e3o","raw_affiliation_strings":["Center of Informatics, Federal University of Pernambuco, Recife, Brazil","Federal University of Pernambuco"],"affiliations":[{"raw_affiliation_string":"Center of Informatics, Federal University of Pernambuco, Recife, Brazil","institution_ids":["https://openalex.org/I25112270"]},{"raw_affiliation_string":"Federal University of Pernambuco","institution_ids":["https://openalex.org/I25112270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083154676","display_name":"Christoph Dieterich","orcid":"https://orcid.org/0000-0001-9468-6311"},"institutions":[{"id":"https://openalex.org/I4210099575","display_name":"InSysBio (Russia)","ror":"https://ror.org/011fdmv87","country_code":"RU","type":"company","lineage":["https://openalex.org/I4210099575"]},{"id":"https://openalex.org/I4210091434","display_name":"MSB Medical School Berlin","ror":"https://ror.org/001vjqx13","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210091434"]}],"countries":["DE","RU"],"is_corresponding":false,"raw_author_name":"Christoph Dieterich","raw_affiliation_strings":["Berlin Institute for Medical Systems Biology, Berlin, Germany","Berlin Institute for Medical Systems Biology"],"affiliations":[{"raw_affiliation_string":"Berlin Institute for Medical Systems Biology, Berlin, Germany","institution_ids":["https://openalex.org/I4210091434"]},{"raw_affiliation_string":"Berlin Institute for Medical Systems Biology","institution_ids":["https://openalex.org/I4210099575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057250270","display_name":"Ivan G. Costa","orcid":"https://orcid.org/0000-0003-2890-8697"},"institutions":[{"id":"https://openalex.org/I25112270","display_name":"Universidade Federal de Pernambuco","ror":"https://ror.org/047908t24","country_code":"BR","type":"education","lineage":["https://openalex.org/I25112270"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ivan G. Costa","raw_affiliation_strings":["Center of Informatics, Federal University of Pernambuco, Recife, Brazil","Federal University of Pernambuco"],"affiliations":[{"raw_affiliation_string":"Center of Informatics, Federal University of Pernambuco, Recife, Brazil","institution_ids":["https://openalex.org/I25112270"]},{"raw_affiliation_string":"Federal University of Pernambuco","institution_ids":["https://openalex.org/I25112270"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030617406"],"corresponding_institution_ids":["https://openalex.org/I25112270"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.5388,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.67707975,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"109","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6117229461669922},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.5794110894203186},{"id":"https://openalex.org/keywords/deoxyribonuclease-i","display_name":"Deoxyribonuclease I","score":0.4744105041027069},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.47335386276245117},{"id":"https://openalex.org/keywords/digestion","display_name":"Digestion (alchemy)","score":0.4388408660888672},{"id":"https://openalex.org/keywords/hypersensitive-site","display_name":"Hypersensitive site","score":0.42888548970222473},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3455401659011841},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.33541566133499146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2970159649848938},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.25191253423690796},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09958317875862122},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.09839838743209839},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.04716876149177551}],"concepts":[{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6117229461669922},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.5794110894203186},{"id":"https://openalex.org/C2779377703","wikidata":"https://www.wikidata.org/wiki/Q14901483","display_name":"Deoxyribonuclease I","level":4,"score":0.4744105041027069},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.47335386276245117},{"id":"https://openalex.org/C2781357212","wikidata":"https://www.wikidata.org/wiki/Q5275608","display_name":"Digestion (alchemy)","level":2,"score":0.4388408660888672},{"id":"https://openalex.org/C58237431","wikidata":"https://www.wikidata.org/wiki/Q5958570","display_name":"Hypersensitive site","level":5,"score":0.42888548970222473},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3455401659011841},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.33541566133499146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2970159649848938},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.25191253423690796},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09958317875862122},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.09839838743209839},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.04716876149177551},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-31927-3_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-31927-3_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:edoc.mdc-berlin.de:16856","is_oa":false,"landing_page_url":"http://edoc.mdc-berlin.de/16856/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2009935171","https://openalex.org/W2015416439","https://openalex.org/W2029722028","https://openalex.org/W2055141743","https://openalex.org/W2078034709","https://openalex.org/W2092390808","https://openalex.org/W2095718954","https://openalex.org/W2095791120","https://openalex.org/W2114850508","https://openalex.org/W2115272837","https://openalex.org/W2118515267","https://openalex.org/W2119804413","https://openalex.org/W2121607820","https://openalex.org/W2132033095","https://openalex.org/W2133681744","https://openalex.org/W2135030836","https://openalex.org/W2142410561","https://openalex.org/W2149769193","https://openalex.org/W2150111516","https://openalex.org/W2159164310","https://openalex.org/W2161849959","https://openalex.org/W2171111703","https://openalex.org/W2171808845","https://openalex.org/W2177510297"],"related_works":["https://openalex.org/W2051881448","https://openalex.org/W2034263817","https://openalex.org/W2140121969","https://openalex.org/W2055141743","https://openalex.org/W1975280558","https://openalex.org/W2046309583","https://openalex.org/W1994736216","https://openalex.org/W4288066063","https://openalex.org/W3164625461","https://openalex.org/W4225834540"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
