{"id":"https://openalex.org/W201801668","doi":"https://doi.org/10.1007/978-3-642-31500-8_28","title":"Parallel and Memory-Efficient Reads Indexing for Genome Assembly","display_name":"Parallel and Memory-Efficient Reads Indexing for Genome Assembly","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W201801668","doi":"https://doi.org/10.1007/978-3-642-31500-8_28","mag":"201801668"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-31500-8_28","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-31500-8_28","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/inria-00637536","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064098309","display_name":"Guillaume Chapuis","orcid":"https://orcid.org/0000-0002-1412-7286"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Guillaume Chapuis","raw_affiliation_strings":["Computer Science Department, ENS Cachan/IRISA, 35042, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, ENS Cachan/IRISA, 35042, Rennes, France","institution_ids":["https://openalex.org/I11559806","https://openalex.org/I2802519937","https://openalex.org/I4210156583"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058310668","display_name":"Rayan Chikhi","orcid":"https://orcid.org/0000-0003-1099-8735"},"institutions":[{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rayan Chikhi","raw_affiliation_strings":["Computer Science Department, ENS Cachan/IRISA, 35042, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, ENS Cachan/IRISA, 35042, Rennes, France","institution_ids":["https://openalex.org/I11559806","https://openalex.org/I2802519937","https://openalex.org/I4210156583"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008215565","display_name":"Dominique Lavenier","orcid":"https://orcid.org/0000-0003-2557-680X"},"institutions":[{"id":"https://openalex.org/I11559806","display_name":"\u00c9cole Normale Sup\u00e9rieure Paris-Saclay","ror":"https://ror.org/00hx6zz33","country_code":"FR","type":"education","lineage":["https://openalex.org/I11559806","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dominique Lavenier","raw_affiliation_strings":["Computer Science Department, ENS Cachan/IRISA, 35042, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, ENS Cachan/IRISA, 35042, Rennes, France","institution_ids":["https://openalex.org/I11559806","https://openalex.org/I2802519937","https://openalex.org/I4210156583"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5064098309"],"corresponding_institution_ids":["https://openalex.org/I11559806","https://openalex.org/I2802519937","https://openalex.org/I4210156583"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06781063,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"272","last_page":"280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.8889884948730469},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8440935611724854},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.6597070693969727},{"id":"https://openalex.org/keywords/bloom-filter","display_name":"Bloom filter","score":0.6008783578872681},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5502347350120544},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4899994432926178},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4679417014122009},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3643348217010498},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2643969655036926},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.1442164182662964},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1379905343055725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11652374267578125},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10972830653190613},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09236130118370056},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08655443787574768}],"concepts":[{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.8889884948730469},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8440935611724854},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.6597070693969727},{"id":"https://openalex.org/C147224247","wikidata":"https://www.wikidata.org/wiki/Q885373","display_name":"Bloom filter","level":2,"score":0.6008783578872681},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5502347350120544},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4899994432926178},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4679417014122009},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3643348217010498},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2643969655036926},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1442164182662964},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1379905343055725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11652374267578125},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10972830653190613},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09236130118370056},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08655443787574768},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-31500-8_28","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-31500-8_28","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:HAL:inria-00637536v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00637536","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Parallel Bio-Computing 2011, Sep 2011, torun, Poland","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:inria-00637536v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00637536","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Parallel Bio-Computing 2011, Sep 2011, torun, Poland","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W30658801","https://openalex.org/W1598134722","https://openalex.org/W1949346071","https://openalex.org/W1966822396","https://openalex.org/W1968812653","https://openalex.org/W1972924519","https://openalex.org/W1974033543","https://openalex.org/W1980606681","https://openalex.org/W2031627786","https://openalex.org/W2033292629","https://openalex.org/W2121911035","https://openalex.org/W2126552018","https://openalex.org/W2133531097","https://openalex.org/W2141370774","https://openalex.org/W2155011418","https://openalex.org/W2159647614","https://openalex.org/W2160969485","https://openalex.org/W2161048357","https://openalex.org/W2161546116","https://openalex.org/W2171475724"],"related_works":["https://openalex.org/W2227807207","https://openalex.org/W2370014100","https://openalex.org/W3137108924","https://openalex.org/W1852009617","https://openalex.org/W4287264924","https://openalex.org/W2042819006","https://openalex.org/W2170165007","https://openalex.org/W1979110442","https://openalex.org/W2156660460","https://openalex.org/W2362866566"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}