{"id":"https://openalex.org/W179707777","doi":"https://doi.org/10.1007/978-3-642-30448-4_31","title":"A Galaxy Workflow for the Functional Annotation of Metagenomic Samples","display_name":"A Galaxy Workflow for the Functional Annotation of Metagenomic Samples","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W179707777","doi":"https://doi.org/10.1007/978-3-642-30448-4_31","mag":"179707777"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-30448-4_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-30448-4_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://doi.org/10.1007/978-3-642-30448-4_31","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089419287","display_name":"Eleftherios Pilalis","orcid":"https://orcid.org/0000-0002-5253-5256"},"institutions":[{"id":"https://openalex.org/I4210127711","display_name":"National Hellenic Research Foundation","ror":"https://ror.org/033m02g29","country_code":"GR","type":"funder","lineage":["https://openalex.org/I4210127711"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Eleftherios Pilalis","raw_affiliation_strings":["Metabolic Engineering & Bioinformatics Group Institute of Biological, Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Metabolic Engineering & Bioinformatics Group Institute of Biological, Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece","institution_ids":["https://openalex.org/I4210127711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089625312","display_name":"Efthymios Ladoukakis","orcid":"https://orcid.org/0000-0002-4807-1292"},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Eythymios Ladoukakis","raw_affiliation_strings":["Laboratory of Biotechnology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biotechnology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I174458059"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089571269","display_name":"Fragiskos N. Kolisis","orcid":"https://orcid.org/0000-0001-7656-3975"},"institutions":[{"id":"https://openalex.org/I174458059","display_name":"National Technical University of Athens","ror":"https://ror.org/03cx6bg69","country_code":"GR","type":"education","lineage":["https://openalex.org/I174458059"]},{"id":"https://openalex.org/I4210127711","display_name":"National Hellenic Research Foundation","ror":"https://ror.org/033m02g29","country_code":"GR","type":"funder","lineage":["https://openalex.org/I4210127711"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Fragiskos N. Kolisis","raw_affiliation_strings":["Laboratory of Biotechnology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece","Metabolic Engineering & Bioinformatics Group Institute of Biological, Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biotechnology, School of Chemical Engineering, National Technical University of Athens, Athens, Greece","institution_ids":["https://openalex.org/I174458059"]},{"raw_affiliation_string":"Metabolic Engineering & Bioinformatics Group Institute of Biological, Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece","institution_ids":["https://openalex.org/I4210127711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067189264","display_name":"Aristotelis Chatziioannou","orcid":"https://orcid.org/0000-0003-2078-0844"},"institutions":[{"id":"https://openalex.org/I4210127711","display_name":"National Hellenic Research Foundation","ror":"https://ror.org/033m02g29","country_code":"GR","type":"funder","lineage":["https://openalex.org/I4210127711"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Aristotelis Chatziioannou","raw_affiliation_strings":["Metabolic Engineering & Bioinformatics Group Institute of Biological, Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece"],"affiliations":[{"raw_affiliation_string":"Metabolic Engineering & Bioinformatics Group Institute of Biological, Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece","institution_ids":["https://openalex.org/I4210127711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089419287"],"corresponding_institution_ids":["https://openalex.org/I4210127711"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.6931,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.90640259,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"247","last_page":"253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9174495935440063},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8655463457107544},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.820942759513855},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7653440237045288},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7159320116043091},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4971354305744171},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.41629719734191895},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37262293696403503},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37139976024627686},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3298882246017456},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24354895949363708},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17576703429222107}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9174495935440063},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8655463457107544},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.820942759513855},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7653440237045288},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7159320116043091},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4971354305744171},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.41629719734191895},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37262293696403503},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37139976024627686},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3298882246017456},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24354895949363708},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17576703429222107},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-30448-4_31","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-30448-4_31","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:dspace.lib.ntua.gr:123456789/36394","is_oa":true,"landing_page_url":"http://doi.org/10.1007/978-3-642-30448-4_31","pdf_url":null,"source":{"id":"https://openalex.org/S4377196837","display_name":"DSpace - NTUA (National Technical University of Athens)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174458059","host_organization_name":"National Technical University of Athens","host_organization_lineage":["https://openalex.org/I174458059"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:dspace.lib.ntua.gr:123456789/36394","is_oa":true,"landing_page_url":"http://doi.org/10.1007/978-3-642-30448-4_31","pdf_url":null,"source":{"id":"https://openalex.org/S4377196837","display_name":"DSpace - NTUA (National Technical University of Athens)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174458059","host_organization_name":"National Technical University of Athens","host_organization_lineage":["https://openalex.org/I174458059"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.4300000071525574,"display_name":"Zero hunger"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320338366","display_name":"FP7 Food, Agriculture and Fisheries, Biotechnology","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1560556066","https://openalex.org/W1996423252","https://openalex.org/W2037548921","https://openalex.org/W2040890279","https://openalex.org/W2055043387","https://openalex.org/W2103017472","https://openalex.org/W2107903949","https://openalex.org/W2135621733","https://openalex.org/W2141885858","https://openalex.org/W2160969485","https://openalex.org/W2161645441","https://openalex.org/W4210400672","https://openalex.org/W6660661997"],"related_works":["https://openalex.org/W2331989206","https://openalex.org/W3173828731","https://openalex.org/W45658120","https://openalex.org/W2008612003","https://openalex.org/W613088223","https://openalex.org/W2045950409","https://openalex.org/W2739025131","https://openalex.org/W4205178530","https://openalex.org/W2606876474","https://openalex.org/W1974405519"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
