{"id":"https://openalex.org/W131966257","doi":"https://doi.org/10.1007/978-3-642-30191-9_28","title":"Designing RNA Secondary Structures in Coding Regions","display_name":"Designing RNA Secondary Structures in Coding Regions","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W131966257","doi":"https://doi.org/10.1007/978-3-642-30191-9_28","mag":"131966257"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-30191-9_28","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-30191-9_28","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090457836","display_name":"Rukhsana Yeasmin","orcid":null},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rukhsana Yeasmin","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook, NY, 11794-4400, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook, NY, 11794-4400, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060741187","display_name":"Steven Skiena","orcid":"https://orcid.org/0000-0003-0397-7514"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Skiena","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook, NY, 11794-4400, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook, NY, 11794-4400, USA","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"299","last_page":"314"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.6091704368591309},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5972456932067871},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5771081447601318},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5643824338912964},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5636969804763794},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5318557620048523},{"id":"https://openalex.org/keywords/inverse","display_name":"Inverse","score":0.4906555712223053},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.4757542312145233},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.4688647389411926},{"id":"https://openalex.org/keywords/pseudoknot","display_name":"Pseudoknot","score":0.43759065866470337},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.4320388436317444},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3943743109703064},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36847537755966187},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3469601571559906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2774890661239624},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26978737115859985},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1912897527217865},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09223982691764832}],"concepts":[{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.6091704368591309},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5972456932067871},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5771081447601318},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5643824338912964},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5636969804763794},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5318557620048523},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.4906555712223053},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.4757542312145233},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.4688647389411926},{"id":"https://openalex.org/C105130999","wikidata":"https://www.wikidata.org/wiki/Q414976","display_name":"Pseudoknot","level":4,"score":0.43759065866470337},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.4320388436317444},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3943743109703064},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36847537755966187},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3469601571559906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2774890661239624},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26978737115859985},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1912897527217865},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09223982691764832},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-30191-9_28","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-30191-9_28","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1519185585","https://openalex.org/W1543796220","https://openalex.org/W1559047570","https://openalex.org/W1861164398","https://openalex.org/W1965243792","https://openalex.org/W1981576666","https://openalex.org/W1981777358","https://openalex.org/W1983438661","https://openalex.org/W1984675364","https://openalex.org/W1995403172","https://openalex.org/W2001674944","https://openalex.org/W2009570821","https://openalex.org/W2009818318","https://openalex.org/W2025763720","https://openalex.org/W2039590841","https://openalex.org/W2045895660","https://openalex.org/W2051242197","https://openalex.org/W2056760934","https://openalex.org/W2063779182","https://openalex.org/W2066829062","https://openalex.org/W2081630359","https://openalex.org/W2085497102","https://openalex.org/W2088528526","https://openalex.org/W2095616710","https://openalex.org/W2102017611","https://openalex.org/W2109881896","https://openalex.org/W2117431427","https://openalex.org/W2141157874","https://openalex.org/W2146721220","https://openalex.org/W2152678443","https://openalex.org/W4229593037","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2954092143","https://openalex.org/W2148725278","https://openalex.org/W2159621058","https://openalex.org/W4225160382","https://openalex.org/W1583489351","https://openalex.org/W2135373808","https://openalex.org/W2105081912","https://openalex.org/W2796011749","https://openalex.org/W1997175692","https://openalex.org/W2059090778"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
