{"id":"https://openalex.org/W2179893475","doi":"https://doi.org/10.1007/978-3-642-30191-9_24","title":"Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles","display_name":"Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2179893475","doi":"https://doi.org/10.1007/978-3-642-30191-9_24","mag":"2179893475"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-30191-9_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-30191-9_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031387460","display_name":"Ayshwarya Subramanian","orcid":"https://orcid.org/0000-0002-4134-7612"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ayshwarya Subramanian","raw_affiliation_strings":["Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, USA, PA, 15213"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, USA, PA, 15213","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027859218","display_name":"Stanley E. Shackney","orcid":null},"institutions":[{"id":"https://openalex.org/I4210111451","display_name":"Oncotherapeutics (United States)","ror":"https://ror.org/01s33dn56","country_code":"US","type":"company","lineage":["https://openalex.org/I4210111451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stanley Shackney","raw_affiliation_strings":["Oncotherapeutics, Pittsburgh, PA, 15243, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oncotherapeutics, Pittsburgh, PA, 15243, USA","institution_ids":["https://openalex.org/I4210111451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051953313","display_name":"Russell Schwartz","orcid":"https://orcid.org/0000-0002-4970-2252"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Schwartz","raw_affiliation_strings":["Department of Biological Sciences, Carnegie Mellon University, 15213, Pittsburgh, PA, USA","Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, USA, PA, 15213","Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, 15213, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Carnegie Mellon University, 15213, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, USA, PA, 15213","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"250","last_page":"262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5877166390419006},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.572604238986969},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5687996745109558},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5515859723091125},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5472634434700012},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5394943356513977},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4862746000289917},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4692763090133667},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3444768190383911},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27724170684814453},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22378861904144287},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18340298533439636}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5877166390419006},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.572604238986969},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5687996745109558},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5515859723091125},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5472634434700012},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5394943356513977},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4862746000289917},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4692763090133667},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3444768190383911},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27724170684814453},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22378861904144287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18340298533439636}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-30191-9_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-30191-9_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1559899545","https://openalex.org/W1607267312","https://openalex.org/W1867732144","https://openalex.org/W1966937303","https://openalex.org/W1968393646","https://openalex.org/W1984000380","https://openalex.org/W1999463736","https://openalex.org/W2011031878","https://openalex.org/W2017535462","https://openalex.org/W2029480581","https://openalex.org/W2065288894","https://openalex.org/W2097255042","https://openalex.org/W2102140136","https://openalex.org/W2109363337","https://openalex.org/W2115162083","https://openalex.org/W2119554316","https://openalex.org/W2122769974","https://openalex.org/W2124810156","https://openalex.org/W2126043934","https://openalex.org/W2126903025","https://openalex.org/W2128985829","https://openalex.org/W2131057697","https://openalex.org/W2131994307","https://openalex.org/W2133174470","https://openalex.org/W2137297899","https://openalex.org/W2149681218","https://openalex.org/W2153933760","https://openalex.org/W2155319189","https://openalex.org/W2155722648","https://openalex.org/W2160299056","https://openalex.org/W2167544405","https://openalex.org/W2170726882","https://openalex.org/W3139657225","https://openalex.org/W3142868075","https://openalex.org/W3199943451","https://openalex.org/W4205911826","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2949296710","https://openalex.org/W2057191541","https://openalex.org/W2883025420","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W1974895455"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
