{"id":"https://openalex.org/W175877181","doi":"https://doi.org/10.1007/978-3-642-29740-3_4","title":"Enabling Data and Compute Intensive Workflows in Bioinformatics","display_name":"Enabling Data and Compute Intensive Workflows in Bioinformatics","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W175877181","doi":"https://doi.org/10.1007/978-3-642-29740-3_4","mag":"175877181"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-29740-3_4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-29740-3_4","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-29740-3_4.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-29740-3_4.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034246908","display_name":"Gaurang Mehta","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Gaurang Mehta","raw_affiliation_strings":["USC Information Sciences Institute, USA"],"affiliations":[{"raw_affiliation_string":"USC Information Sciences Institute, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031941569","display_name":"Ewa Deelman","orcid":"https://orcid.org/0000-0001-5106-503X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ewa Deelman","raw_affiliation_strings":["USC Information Sciences Institute, USA"],"affiliations":[{"raw_affiliation_string":"USC Information Sciences Institute, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101623318","display_name":"James A. Knowles","orcid":"https://orcid.org/0000-0002-3307-5741"},"institutions":[{"id":"https://openalex.org/I2800154431","display_name":"Keck Hospital of USC","ror":"https://ror.org/01rq8ck58","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800154431"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Knowles","raw_affiliation_strings":["Keck School of Medicine of USC, USA"],"affiliations":[{"raw_affiliation_string":"Keck School of Medicine of USC, USA","institution_ids":["https://openalex.org/I2800154431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100443173","display_name":"Ting Chen","orcid":"https://orcid.org/0000-0001-8414-6346"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ting Chen","raw_affiliation_strings":["University of Southern California, USA"],"affiliations":[{"raw_affiliation_string":"University of Southern California, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115695367","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0001-8766-5950"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["University of Southern California, USA","Xiamen University, P.R. China"],"affiliations":[{"raw_affiliation_string":"University of Southern California, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Xiamen University, P.R. China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072263643","display_name":"Jens V\u00f6ckler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jens V\u00f6ckler","raw_affiliation_strings":["USC Information Sciences Institute, USA"],"affiliations":[{"raw_affiliation_string":"USC Information Sciences Institute, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021265846","display_name":"Steven Buyske","orcid":"https://orcid.org/0000-0001-8539-5416"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Buyske","raw_affiliation_strings":["Rutgers University, USA"],"affiliations":[{"raw_affiliation_string":"Rutgers University, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054432053","display_name":"Tara C. Matise","orcid":"https://orcid.org/0000-0002-7147-492X"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tara Matise","raw_affiliation_strings":["Rutgers University, USA"],"affiliations":[{"raw_affiliation_string":"Rutgers University, USA","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5034246908"],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.2238,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.92028986,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"23","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8207305669784546},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7909908890724182},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5914167761802673},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5456879138946533},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48271819949150085},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.46105635166168213},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.4311518967151642},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4096626341342926},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35354459285736084},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22873660922050476},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09283846616744995},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06966501474380493}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8207305669784546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7909908890724182},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5914167761802673},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5456879138946533},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48271819949150085},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.46105635166168213},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.4311518967151642},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4096626341342926},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35354459285736084},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22873660922050476},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09283846616744995},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06966501474380493},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-29740-3_4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-29740-3_4","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-29740-3_4.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:alma.01RUT_INST:11664860590004646","is_oa":false,"landing_page_url":"https://scholarship.libraries.rutgers.edu/esploro/outputs/bookChapter/Enabling-Data-and-Compute-Intensive-Workflows/991031665233704646","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Book Section"}],"best_oa_location":{"id":"doi:10.1007/978-3-642-29740-3_4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-642-29740-3_4","pdf_url":"https://link.springer.com/content/pdf/10.1007/978-3-642-29740-3_4.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2399853721","display_name":"SDCI NMI Improvement: Pegasus: From Concept to Execution- - -Mapping Scientific Workflows onto the National Cyberinfrastructure","funder_award_id":"0722019","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4836300938","display_name":null,"funder_award_id":"MH089921","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6159000954","display_name":null,"funder_award_id":"U01HG004801","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6757607708","display_name":null,"funder_award_id":"MH089929","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W175877181.pdf","grobid_xml":"https://content.openalex.org/works/W175877181.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W1589347887","https://openalex.org/W1977468614","https://openalex.org/W1981593008","https://openalex.org/W1983833794","https://openalex.org/W2026465178","https://openalex.org/W2058042440","https://openalex.org/W2102572585","https://openalex.org/W2102729801","https://openalex.org/W2107862628","https://openalex.org/W2115872073","https://openalex.org/W2129666400","https://openalex.org/W2137653635","https://openalex.org/W2140332639","https://openalex.org/W2143051000","https://openalex.org/W2144320400","https://openalex.org/W2150424267","https://openalex.org/W2152526229","https://openalex.org/W2153902830","https://openalex.org/W2169180789","https://openalex.org/W2170901349","https://openalex.org/W2254543411","https://openalex.org/W2374207861","https://openalex.org/W2978655370","https://openalex.org/W3196112465","https://openalex.org/W6681252446"],"related_works":["https://openalex.org/W2375304607","https://openalex.org/W2391168633","https://openalex.org/W2035995658","https://openalex.org/W2353477037","https://openalex.org/W1574425962","https://openalex.org/W2385499106","https://openalex.org/W2354357087","https://openalex.org/W2352774566","https://openalex.org/W4243836028","https://openalex.org/W2376671203"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
