{"id":"https://openalex.org/W1879193574","doi":"https://doi.org/10.1007/978-3-642-29627-7_35","title":"Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding RNAs","display_name":"Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding RNAs","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W1879193574","doi":"https://doi.org/10.1007/978-3-642-29627-7_35","mag":"1879193574"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-29627-7_35","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_35","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/1721.1/82919","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I4210110987","display_name":"IIT@MIT","ror":"https://ror.org/01wp8zh54","country_code":"US","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210110987"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Math. Department and CSAIL, MIT, Cambridge, USA","Math. Department and CSAIL, MIT, Cambridge, MA#TAB#"],"affiliations":[{"raw_affiliation_string":"Math. Department and CSAIL, MIT, Cambridge, USA","institution_ids":["https://openalex.org/I4210110987"]},{"raw_affiliation_string":"Math. Department and CSAIL, MIT, Cambridge, MA#TAB#","institution_ids":["https://openalex.org/I4210110987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022834461","display_name":"Michael Yu","orcid":"https://orcid.org/0000-0002-9560-2017"},"institutions":[{"id":"https://openalex.org/I4210110987","display_name":"IIT@MIT","ror":"https://ror.org/01wp8zh54","country_code":"US","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210110987"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Yu","raw_affiliation_strings":["Math. Department and CSAIL, MIT, Cambridge, USA","Math. Department and CSAIL, MIT, Cambridge, MA#TAB#"],"affiliations":[{"raw_affiliation_string":"Math. Department and CSAIL, MIT, Cambridge, USA","institution_ids":["https://openalex.org/I4210110987"]},{"raw_affiliation_string":"Math. Department and CSAIL, MIT, Cambridge, MA#TAB#","institution_ids":["https://openalex.org/I4210110987"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044078921","display_name":"Bonnie Berger","orcid":"https://orcid.org/0000-0002-2724-7228"},"institutions":[{"id":"https://openalex.org/I4210110987","display_name":"IIT@MIT","ror":"https://ror.org/01wp8zh54","country_code":"US","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210110987"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bonnie Berger","raw_affiliation_strings":["Math. Department and CSAIL, MIT, Cambridge, USA","Math. Department and CSAIL, MIT, Cambridge, MA#TAB#"],"affiliations":[{"raw_affiliation_string":"Math. Department and CSAIL, MIT, Cambridge, USA","institution_ids":["https://openalex.org/I4210110987"]},{"raw_affiliation_string":"Math. Department and CSAIL, MIT, Cambridge, MA#TAB#","institution_ids":["https://openalex.org/I4210110987"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103135268"],"corresponding_institution_ids":["https://openalex.org/I4210110987"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.1556,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.89046374,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"341","last_page":"341"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.653175950050354},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.5896129608154297},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.552401065826416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5034467577934265},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.46034836769104004},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.406755656003952},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4049715995788574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37676510214805603},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.296597957611084},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1870565116405487}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.653175950050354},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.5896129608154297},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.552401065826416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5034467577934265},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.46034836769104004},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.406755656003952},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4049715995788574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37676510214805603},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.296597957611084},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1870565116405487},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-29627-7_35","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_35","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:dspace.mit.edu:1721.1/82919","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/82919","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cold Spring Harbor Laboratory Press","raw_type":"http://purl.org/eprint/type/JournalArticle"}],"best_oa_location":{"id":"pmh:oai:dspace.mit.edu:1721.1/82919","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/82919","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cold Spring Harbor Laboratory Press","raw_type":"http://purl.org/eprint/type/JournalArticle"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7400000095367432,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W194850808","https://openalex.org/W1605441808","https://openalex.org/W1822105579","https://openalex.org/W1969462345","https://openalex.org/W1974736226","https://openalex.org/W1982136814","https://openalex.org/W2003062976","https://openalex.org/W2024799598","https://openalex.org/W2033339460","https://openalex.org/W2050256969","https://openalex.org/W2057589481","https://openalex.org/W2058494629","https://openalex.org/W2063055554","https://openalex.org/W2067737295","https://openalex.org/W2070777085","https://openalex.org/W2075145482","https://openalex.org/W2084191969","https://openalex.org/W2098816661","https://openalex.org/W2103078067","https://openalex.org/W2106246933","https://openalex.org/W2108537834","https://openalex.org/W2110065044","https://openalex.org/W2110638928","https://openalex.org/W2111272410","https://openalex.org/W2111773652","https://openalex.org/W2112132489","https://openalex.org/W2118533197","https://openalex.org/W2122035121","https://openalex.org/W2122679732","https://openalex.org/W2130682154","https://openalex.org/W2132046933","https://openalex.org/W2132885152","https://openalex.org/W2132926880","https://openalex.org/W2140302584","https://openalex.org/W2140651796","https://openalex.org/W2140882426","https://openalex.org/W2142116796","https://openalex.org/W2146573461","https://openalex.org/W2151922790","https://openalex.org/W2152267201","https://openalex.org/W2152846613","https://openalex.org/W2155858493","https://openalex.org/W2158826174","https://openalex.org/W2159738351","https://openalex.org/W2160387598","https://openalex.org/W2160845145","https://openalex.org/W2163965551","https://openalex.org/W2165686834","https://openalex.org/W2167354028","https://openalex.org/W2167557255","https://openalex.org/W2170157200","https://openalex.org/W2412439129","https://openalex.org/W2803927613"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W2058984380","https://openalex.org/W1985408726","https://openalex.org/W187239587"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
