{"id":"https://openalex.org/W2230529701","doi":"https://doi.org/10.1007/978-3-642-29627-7_29","title":"Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract","display_name":"Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2230529701","doi":"https://doi.org/10.1007/978-3-642-29627-7_29","mag":"2230529701"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-29627-7_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089528237","display_name":"Kai Song","orcid":"https://orcid.org/0000-0001-6792-7159"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Song","raw_affiliation_strings":["School of Mathematics, Peking University, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Peking University, Beijing, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100720540","display_name":"Jie Ren","orcid":"https://orcid.org/0000-0003-0464-9096"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Ren","raw_affiliation_strings":["School of Mathematics, Peking University, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Peking University, Beijing, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068904766","display_name":"Zhiyuan Zhai","orcid":"https://orcid.org/0000-0003-1930-9633"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyuan Zhai","raw_affiliation_strings":["School of Mathematics, Shandong University, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Shandong University, P.R. China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104668695","display_name":"Xuemei Liu","orcid":"https://orcid.org/0000-0003-3750-4280"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuemei Liu","raw_affiliation_strings":["School of Physics, South China University of Technology, Guangzhou, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics, South China University of Technology, Guangzhou, P.R. China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101690048","display_name":"Minghua Deng","orcid":"https://orcid.org/0000-0002-2411-9650"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minghua Deng","raw_affiliation_strings":["School of Mathematics, Peking University, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics, Peking University, Beijing, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022255550","display_name":"Fengzhu Sun","orcid":"https://orcid.org/0000-0002-8552-043X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Fengzhu Sun","raw_affiliation_strings":["Molecular and Computational Biology Program, University of Southern California, Los Angeles, USA","TNLIST/Department of Automation, Tsinghua University, Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Computational Biology Program, University of Southern California, Los Angeles, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"TNLIST/Department of Automation, Tsinghua University, Beijing, P.R. China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.3134,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.92762364,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"272","last_page":"285"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.758626401424408},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6125152111053467},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6028249263763428},{"id":"https://openalex.org/keywords/k-mer","display_name":"k-mer","score":0.5887656211853027},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.5562578439712524},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5539400577545166},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5454065203666687},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5378846526145935},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5142173767089844},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4969983398914337},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48630866408348083},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46468567848205566},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4389099180698395},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.43367648124694824},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36155495047569275},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28554314374923706},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.2684725522994995},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1888362169265747},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18814444541931152},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1234666109085083},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10818788409233093},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.102659672498703},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07767128944396973}],"concepts":[{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.758626401424408},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6125152111053467},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6028249263763428},{"id":"https://openalex.org/C2279292","wikidata":"https://www.wikidata.org/wiki/Q6322851","display_name":"k-mer","level":4,"score":0.5887656211853027},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.5562578439712524},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5539400577545166},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5454065203666687},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5378846526145935},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5142173767089844},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4969983398914337},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48630866408348083},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46468567848205566},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4389099180698395},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43367648124694824},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36155495047569275},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28554314374923706},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.2684725522994995},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1888362169265747},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18814444541931152},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1234666109085083},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10818788409233093},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.102659672498703},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07767128944396973},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-29627-7_29","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_29","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1968363797","https://openalex.org/W1973518241","https://openalex.org/W1986908504","https://openalex.org/W2008813699","https://openalex.org/W2023621259","https://openalex.org/W2048818637","https://openalex.org/W2068340306","https://openalex.org/W2088775137","https://openalex.org/W2095748631","https://openalex.org/W2111798311","https://openalex.org/W2116790427","https://openalex.org/W2124163981","https://openalex.org/W2129920058","https://openalex.org/W2150774511","https://openalex.org/W2154537630","https://openalex.org/W2155430004","https://openalex.org/W2158727584","https://openalex.org/W2166162901","https://openalex.org/W2168451430","https://openalex.org/W2171963266","https://openalex.org/W2914081640"],"related_works":["https://openalex.org/W2417514914","https://openalex.org/W2047656369","https://openalex.org/W2165847428","https://openalex.org/W4301423173","https://openalex.org/W2008090296","https://openalex.org/W2949590523","https://openalex.org/W2132414125","https://openalex.org/W4256345205","https://openalex.org/W2057520973","https://openalex.org/W2230529701"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
