{"id":"https://openalex.org/W153899650","doi":"https://doi.org/10.1007/978-3-642-29627-7_27","title":"Exact Pattern Matching for RNA Structure Ensembles","display_name":"Exact Pattern Matching for RNA Structure Ensembles","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W153899650","doi":"https://doi.org/10.1007/978-3-642-29627-7_27","mag":"153899650"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-29627-7_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066783422","display_name":"Christina Schmiedl","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christina Schmiedl","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030896530","display_name":"Mathias M\u00f6hl","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mathias M\u00f6hl","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006405534","display_name":"Steffen Heyne","orcid":"https://orcid.org/0000-0002-9497-7538"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen Heyne","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028302347","display_name":"Mika Amit","orcid":"https://orcid.org/0000-0001-5178-7817"},"institutions":[{"id":"https://openalex.org/I91203450","display_name":"University of Haifa","ror":"https://ror.org/02f009v59","country_code":"IL","type":"education","lineage":["https://openalex.org/I91203450"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Mika Amit","raw_affiliation_strings":["Department of Computer Science, University of Haifa, Haifa, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Haifa, Haifa, Israel","institution_ids":["https://openalex.org/I91203450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111624806","display_name":"Gad M. Landau","orcid":null},"institutions":[{"id":"https://openalex.org/I91203450","display_name":"University of Haifa","ror":"https://ror.org/02f009v59","country_code":"IL","type":"education","lineage":["https://openalex.org/I91203450"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Gad M. Landau","raw_affiliation_strings":["Department of Computer Science and Engineering, NYU-Poly, Brooklyn, NY, USA","Department of Computer Science, University of Haifa, Haifa, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, NYU-Poly, Brooklyn, NY, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Haifa, Haifa, Israel","institution_ids":["https://openalex.org/I91203450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I4210110987","display_name":"IIT@MIT","ror":"https://ror.org/01wp8zh54","country_code":"US","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210110987"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","CSAIL and Mathematics Department, MIT, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"CSAIL and Mathematics Department, MIT, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210110987"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","Center for Biological Signaling Studies (BIOSS), Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Institute of Computer Science, Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Center for Biological Signaling Studies (BIOSS), Albert-Ludwigs-Universit\u00e4t, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5066783422"],"corresponding_institution_ids":["https://openalex.org/I161046081"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.6922,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.90551995,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"245","last_page":"260"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chaining","display_name":"Chaining","score":0.8207785487174988},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6424810886383057},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6011674404144287},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5890371203422546},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5397862195968628},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38311466574668884},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3442996144294739},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27898961305618286}],"concepts":[{"id":"https://openalex.org/C49020025","wikidata":"https://www.wikidata.org/wiki/Q1059099","display_name":"Chaining","level":2,"score":0.8207785487174988},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6424810886383057},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6011674404144287},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5890371203422546},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5397862195968628},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38311466574668884},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3442996144294739},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27898961305618286},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-29627-7_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W194850808","https://openalex.org/W1561076671","https://openalex.org/W1822105579","https://openalex.org/W1873547760","https://openalex.org/W1967864248","https://openalex.org/W1984675364","https://openalex.org/W1994749285","https://openalex.org/W2001583934","https://openalex.org/W2003062976","https://openalex.org/W2018216725","https://openalex.org/W2048814860","https://openalex.org/W2064714768","https://openalex.org/W2066310505","https://openalex.org/W2095145214","https://openalex.org/W2096585562","https://openalex.org/W2099386783","https://openalex.org/W2099468911","https://openalex.org/W2106554405","https://openalex.org/W2108298758","https://openalex.org/W2111773652","https://openalex.org/W2114094654","https://openalex.org/W2115215562","https://openalex.org/W2118829610","https://openalex.org/W2122035121","https://openalex.org/W2127981985","https://openalex.org/W2134861301","https://openalex.org/W2136725005","https://openalex.org/W2140651796","https://openalex.org/W2142116796","https://openalex.org/W2156443907","https://openalex.org/W2158826174","https://openalex.org/W2163798335","https://openalex.org/W2165437648","https://openalex.org/W2166745309","https://openalex.org/W2170157200","https://openalex.org/W2171692151","https://openalex.org/W2187417714","https://openalex.org/W2477408078","https://openalex.org/W2803927613"],"related_works":["https://openalex.org/W1995270367","https://openalex.org/W2767696758","https://openalex.org/W4387627836","https://openalex.org/W2107793209","https://openalex.org/W2041767423","https://openalex.org/W4200061056","https://openalex.org/W3028301851","https://openalex.org/W2901315987","https://openalex.org/W2486348789","https://openalex.org/W1581002386"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
