{"id":"https://openalex.org/W2179331521","doi":"https://doi.org/10.1007/978-3-642-29627-7_12","title":"A Robust Method for Transcript Quantification with RNA-seq Data","display_name":"A Robust Method for Transcript Quantification with RNA-seq Data","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2179331521","doi":"https://doi.org/10.1007/978-3-642-29627-7_12","mag":"2179331521"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-29627-7_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022714913","display_name":"Yan Huang","orcid":"https://orcid.org/0000-0003-3833-9248"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Huang","raw_affiliation_strings":["Department of Computer Science, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101650923","display_name":"Yin Hu","orcid":"https://orcid.org/0000-0003-2258-9787"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yin Hu","raw_affiliation_strings":["Department of Computer Science, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091112024","display_name":"Corbin D. Jones","orcid":"https://orcid.org/0000-0001-7281-7130"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Corbin D. Jones","raw_affiliation_strings":["Department of Biology, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047457069","display_name":"James N. MacLeod","orcid":null},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James N. MacLeod","raw_affiliation_strings":["Department of Veterinary Science, University of Kentucky, USA"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary Science, University of Kentucky, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063447892","display_name":"Derek Y. Chiang","orcid":"https://orcid.org/0000-0002-1131-6065"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derek Y. Chiang","raw_affiliation_strings":["Department of Genetics, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100376628","display_name":"Yufeng Liu","orcid":"https://orcid.org/0000-0003-2653-3510"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufeng Liu","raw_affiliation_strings":["Department of Statistics and Operations Research, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics and Operations Research, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011567934","display_name":"Jan F. Prins","orcid":"https://orcid.org/0000-0003-0853-6099"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jan F. Prins","raw_affiliation_strings":["Department of Computer Science, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021864206","display_name":"Jinze Liu","orcid":"https://orcid.org/0000-0003-0692-8793"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinze Liu","raw_affiliation_strings":["Department of Computer Science, University of North Carolina, Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina, Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5022714913"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.5874,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.90059055,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"127","last_page":"147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6186524033546448},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6035213470458984},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.583686113357544},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.44232290983200073},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.428947389125824},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.4108871817588806},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36151114106178284},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34440815448760986},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27969416975975037},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2165098786354065},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18924760818481445}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6186524033546448},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6035213470458984},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.583686113357544},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.44232290983200073},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.428947389125824},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.4108871817588806},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36151114106178284},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34440815448760986},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27969416975975037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2165098786354065},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18924760818481445},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-29627-7_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W36405680","https://openalex.org/W144334492","https://openalex.org/W1981509058","https://openalex.org/W2000875411","https://openalex.org/W2010637767","https://openalex.org/W2011753019","https://openalex.org/W2011920499","https://openalex.org/W2023608682","https://openalex.org/W2023621259","https://openalex.org/W2053386347","https://openalex.org/W2065596509","https://openalex.org/W2086323500","https://openalex.org/W2093253451","https://openalex.org/W2096884903","https://openalex.org/W2098849734","https://openalex.org/W2100448568","https://openalex.org/W2105875994","https://openalex.org/W2107564978","https://openalex.org/W2107903949","https://openalex.org/W2118150714","https://openalex.org/W2122410182","https://openalex.org/W2126144698","https://openalex.org/W2129916363","https://openalex.org/W2135046866","https://openalex.org/W2138773756","https://openalex.org/W2141458291","https://openalex.org/W2143174447","https://openalex.org/W2143513235","https://openalex.org/W2144141220","https://openalex.org/W2147087089","https://openalex.org/W2152352881","https://openalex.org/W2155804510","https://openalex.org/W2158297569","https://openalex.org/W2172078094","https://openalex.org/W2248731764","https://openalex.org/W2610857016"],"related_works":["https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362592482","https://openalex.org/W4362511560","https://openalex.org/W4377231761"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
