{"id":"https://openalex.org/W2109823739","doi":"https://doi.org/10.1007/978-3-642-29627-7_10","title":"Evolution of Genome Organization by Duplication and Loss: An Alignment Approach","display_name":"Evolution of Genome Organization by Duplication and Loss: An Alignment Approach","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2109823739","doi":"https://doi.org/10.1007/978-3-642-29627-7_10","mag":"2109823739"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-29627-7_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064823524","display_name":"Patrick Holloway","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161954","display_name":"D\u00e9partement d'Informatique","ror":"https://ror.org/05y6rqs46","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210159245","https://openalex.org/I4210161954"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"Patrick Holloway","raw_affiliation_strings":["D\u00e9partement d\u2019Informatique et de Recherche Op\u00e9rationnelle (DIRO), Universit\u00e9 de Montr\u00e9al, H3C 3J7, Canada","D\u00e9partement d'Informatique et de Recherche Op\u00e9rationnelle (DIRO), Universit\u00e9 de Montr\u00e9al, H3C 3J7, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"D\u00e9partement d\u2019Informatique et de Recherche Op\u00e9rationnelle (DIRO), Universit\u00e9 de Montr\u00e9al, H3C 3J7, Canada","institution_ids":["https://openalex.org/I4210161954"]},{"raw_affiliation_string":"D\u00e9partement d'Informatique et de Recherche Op\u00e9rationnelle (DIRO), Universit\u00e9 de Montr\u00e9al, H3C 3J7, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014999428","display_name":"Krister M. Swenson","orcid":"https://orcid.org/0000-0001-8690-1261"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Krister Swenson","raw_affiliation_strings":["DIRO, Canada","University of McGill Computer Science, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIRO, Canada","institution_ids":[]},{"raw_affiliation_string":"University of McGill Computer Science, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067627186","display_name":"David H. Ardell","orcid":"https://orcid.org/0000-0001-7313-0963"},"institutions":[{"id":"https://openalex.org/I156087764","display_name":"University of California, Merced","ror":"https://ror.org/00d9ah105","country_code":"US","type":"education","lineage":["https://openalex.org/I156087764"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Ardell","raw_affiliation_strings":["Center for Computational Biology, School of Natural Sciences, University of California, 5200 North Lake Road, Merced, CA, 95343, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology, School of Natural Sciences, University of California, 5200 North Lake Road, Merced, CA, 95343, USA","institution_ids":["https://openalex.org/I156087764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041470344","display_name":"Nadia El-Mabrouk","orcid":"https://orcid.org/0000-0002-5385-1015"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nadia El-Mabrouk","raw_affiliation_strings":["DIRO, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DIRO, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"94","last_page":"112"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6544688940048218},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.6118887066841125},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5244993567466736},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.49554741382598877},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4841111898422241},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4452192783355713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4339594542980194},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.4235069453716278},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4113045930862427},{"id":"https://openalex.org/keywords/genome-evolution","display_name":"Genome evolution","score":0.41099196672439575},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4009649157524109},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3457672595977783},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3238389492034912},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16276627779006958}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6544688940048218},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.6118887066841125},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5244993567466736},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.49554741382598877},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4841111898422241},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4452192783355713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4339594542980194},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4235069453716278},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4113045930862427},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.41099196672439575},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4009649157524109},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3457672595977783},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3238389492034912},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16276627779006958}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-29627-7_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-29627-7_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.225.1503","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.225.1503","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.iro.umontreal.ca/%7Emabrouk/Publications/RECOMB12.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W74509308","https://openalex.org/W152315924","https://openalex.org/W1506292197","https://openalex.org/W1516878686","https://openalex.org/W1710161464","https://openalex.org/W1795360038","https://openalex.org/W1834619628","https://openalex.org/W1989978323","https://openalex.org/W1992140809","https://openalex.org/W2017262287","https://openalex.org/W2019094970","https://openalex.org/W2019591778","https://openalex.org/W2029036185","https://openalex.org/W2037537665","https://openalex.org/W2041624900","https://openalex.org/W2042700625","https://openalex.org/W2045395021","https://openalex.org/W2054453787","https://openalex.org/W2060973867","https://openalex.org/W2074299224","https://openalex.org/W2085543266","https://openalex.org/W2095829109","https://openalex.org/W2096466922","https://openalex.org/W2103849916","https://openalex.org/W2106263124","https://openalex.org/W2112780227","https://openalex.org/W2122537361","https://openalex.org/W2127893541","https://openalex.org/W2130640131","https://openalex.org/W2130849966","https://openalex.org/W2131148812","https://openalex.org/W2133090982","https://openalex.org/W2135123683","https://openalex.org/W2151632575","https://openalex.org/W2161192208","https://openalex.org/W2161826285","https://openalex.org/W2174961330","https://openalex.org/W2477408078","https://openalex.org/W2567911648","https://openalex.org/W3030471038","https://openalex.org/W3103032681","https://openalex.org/W4213205621","https://openalex.org/W4229487902","https://openalex.org/W4388297196"],"related_works":["https://openalex.org/W1565527690","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2353729507","https://openalex.org/W4318240630","https://openalex.org/W2346036277","https://openalex.org/W2156424038","https://openalex.org/W2152876917","https://openalex.org/W2350466590","https://openalex.org/W1542620732"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
