{"id":"https://openalex.org/W47274235","doi":"https://doi.org/10.1007/978-3-642-28839-5_32","title":"Coffee Transcriptome Visualization Based on Functional Relationships among Gene Annotations","display_name":"Coffee Transcriptome Visualization Based on Functional Relationships among Gene Annotations","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W47274235","doi":"https://doi.org/10.1007/978-3-642-28839-5_32","mag":"47274235"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-28839-5_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-28839-5_32","pdf_url":null,"source":{"id":"https://openalex.org/S4210208846","display_name":"Advances in intelligent and soft computing","issn_l":"1867-5662","issn":["1867-5662","1867-5670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Intelligent and Soft Computing","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016481280","display_name":"Luis Castillo","orcid":"https://orcid.org/0000-0002-2878-8229"},"institutions":[{"id":"https://openalex.org/I152456871","display_name":"University of Caldas","ror":"https://ror.org/049n68p64","country_code":"CO","type":"education","lineage":["https://openalex.org/I152456871"]},{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]}],"countries":["CO"],"is_corresponding":true,"raw_author_name":"Luis F. Castillo","raw_affiliation_strings":["Departamento Ing. Industrial, Universidad Nacional de Colombia, Manizales, Colombia","Departamento de Sistemas e Inform\u00e1tica, Universidad de Caldas, Manizales, Colombia","Universidad de Caldas","Universidad Nacional de Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento Ing. Industrial, Universidad Nacional de Colombia, Manizales, Colombia","institution_ids":["https://openalex.org/I36243813"]},{"raw_affiliation_string":"Departamento de Sistemas e Inform\u00e1tica, Universidad de Caldas, Manizales, Colombia","institution_ids":["https://openalex.org/I152456871"]},{"raw_affiliation_string":"Universidad de Caldas","institution_ids":["https://openalex.org/I152456871"]},{"raw_affiliation_string":"Universidad Nacional de Colombia","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018380286","display_name":"Oscar G\u00f3mez-Ram\u00edrez","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093237","display_name":"Universidad Autonoma de Manizales","ror":"https://ror.org/00jfare13","country_code":"CO","type":"education","lineage":["https://openalex.org/I4210093237"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Oscar G\u00f3mez-Ram\u00edrez","raw_affiliation_strings":["Grupo Investigaci\u00f3n Ing. Del Software, Universidad Aut\u00f3noma de Manizales, Manizales, Colombia","Universidad Aut\u00f3noma de Manizales"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grupo Investigaci\u00f3n Ing. Del Software, Universidad Aut\u00f3noma de Manizales, Manizales, Colombia","institution_ids":["https://openalex.org/I4210093237"]},{"raw_affiliation_string":"Universidad Aut\u00f3noma de Manizales","institution_ids":["https://openalex.org/I4210093237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018068029","display_name":"Narmer F. Galeano","orcid":"https://orcid.org/0000-0002-8337-2824"},"institutions":[{"id":"https://openalex.org/I4210159669","display_name":"Centro de Investigaci\u00f3n de la Ca\u00f1a de Az\u00facar de Colombia","ror":"https://ror.org/0510ctm72","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210159669"]},{"id":"https://openalex.org/I4387153640","display_name":"Centro Nacional de Investigaciones de Caf\u00e9","ror":"https://ror.org/03q60bw50","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387153640"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Narmer Galeano-Vanegas","raw_affiliation_strings":["Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9, Chinchina, Colombia","Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9, Chinchina, Colombia","institution_ids":["https://openalex.org/I4210159669","https://openalex.org/I4387153640"]},{"raw_affiliation_string":"Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9","institution_ids":["https://openalex.org/I4387153640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091313954","display_name":"Luis Bertel-Paternina","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093237","display_name":"Universidad Autonoma de Manizales","ror":"https://ror.org/00jfare13","country_code":"CO","type":"education","lineage":["https://openalex.org/I4210093237"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Luis Bertel-Paternina","raw_affiliation_strings":["Grupo Investigaci\u00f3n Ing. Del Software, Universidad Aut\u00f3noma de Manizales, Manizales, Colombia","Universidad Aut\u00f3noma de Manizales"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grupo Investigaci\u00f3n Ing. Del Software, Universidad Aut\u00f3noma de Manizales, Manizales, Colombia","institution_ids":["https://openalex.org/I4210093237"]},{"raw_affiliation_string":"Universidad Aut\u00f3noma de Manizales","institution_ids":["https://openalex.org/I4210093237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001879047","display_name":"Gustavo Isaza","orcid":"https://orcid.org/0000-0002-1089-4605"},"institutions":[{"id":"https://openalex.org/I152456871","display_name":"University of Caldas","ror":"https://ror.org/049n68p64","country_code":"CO","type":"education","lineage":["https://openalex.org/I152456871"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Gustavo Isaza","raw_affiliation_strings":["Departamento de Sistemas e Inform\u00e1tica, Universidad de Caldas, Manizales, Colombia","Universidad de Caldas"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas e Inform\u00e1tica, Universidad de Caldas, Manizales, Colombia","institution_ids":["https://openalex.org/I152456871"]},{"raw_affiliation_string":"Universidad de Caldas","institution_ids":["https://openalex.org/I152456871"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083248458","display_name":"\u00c1lvaro Gait\u00e1n-Bustamante","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159669","display_name":"Centro de Investigaci\u00f3n de la Ca\u00f1a de Az\u00facar de Colombia","ror":"https://ror.org/0510ctm72","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210159669"]},{"id":"https://openalex.org/I4387153640","display_name":"Centro Nacional de Investigaciones de Caf\u00e9","ror":"https://ror.org/03q60bw50","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387153640"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"\u00c1lvaro Gait\u00e1n-Bustamante","raw_affiliation_strings":["Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9, Chinchina, Colombia","Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9, Chinchina, Colombia","institution_ids":["https://openalex.org/I4210159669","https://openalex.org/I4387153640"]},{"raw_affiliation_string":"Centro Nacional de Investigaci\u00f3n del Caf\u00e9- CENICAF\u00c9","institution_ids":["https://openalex.org/I4387153640"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5016481280"],"corresponding_institution_ids":["https://openalex.org/I152456871","https://openalex.org/I36243813"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01718213,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"277","last_page":"283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9459999799728394,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9283000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.8109232187271118},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6372439861297607},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.507595419883728},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5008664131164551},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45347291231155396},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37057721614837646},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2692906856536865},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1525525450706482},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.15028220415115356}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.8109232187271118},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6372439861297607},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.507595419883728},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5008664131164551},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45347291231155396},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37057721614837646},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2692906856536865},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1525525450706482},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.15028220415115356}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-28839-5_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-28839-5_32","pdf_url":null,"source":{"id":"https://openalex.org/S4210208846","display_name":"Advances in intelligent and soft computing","issn_l":"1867-5662","issn":["1867-5662","1867-5670"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Intelligent and Soft Computing","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1975736716","https://openalex.org/W1976584813","https://openalex.org/W2064236582","https://openalex.org/W2098777319","https://openalex.org/W2116934505","https://openalex.org/W2140635350","https://openalex.org/W2142624595","https://openalex.org/W2152263730","https://openalex.org/W2159249756"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W2117258802"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-05-20T08:49:12.498775","created_date":"2025-10-10T00:00:00"}