{"id":"https://openalex.org/W140010597","doi":"https://doi.org/10.1007/978-3-642-28062-7_8","title":"Interface Similarity Improves Comparison of DNA-Binding Proteins: The Homeobox Example","display_name":"Interface Similarity Improves Comparison of DNA-Binding Proteins: The Homeobox Example","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W140010597","doi":"https://doi.org/10.1007/978-3-642-28062-7_8","mag":"140010597"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-28062-7_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-28062-7_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10261/51825","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010459612","display_name":"\u00c1lvaro Sebasti\u00e1n","orcid":null},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210143242","display_name":"Estaci\u00f3n Experimental de Aula Dei","ror":"https://ror.org/056a37x91","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210143242"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"\u00c1lvaro Sebasti\u00e1n","raw_affiliation_strings":["Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza, Espa\u00f1a","Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Zaragoza, Espa\u00f1a#TAB#"],"affiliations":[{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza, Espa\u00f1a","institution_ids":["https://openalex.org/I4210143242"]},{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Zaragoza, Espa\u00f1a#TAB#","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091594546","display_name":"Carlos P. Cantalapiedra","orcid":"https://orcid.org/0000-0001-5263-533X"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210143242","display_name":"Estaci\u00f3n Experimental de Aula Dei","ror":"https://ror.org/056a37x91","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210143242"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos P. Cantalapiedra","raw_affiliation_strings":["Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza, Espa\u00f1a","Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Zaragoza, Espa\u00f1a#TAB#"],"affiliations":[{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza, Espa\u00f1a","institution_ids":["https://openalex.org/I4210143242"]},{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Zaragoza, Espa\u00f1a#TAB#","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091306558","display_name":"Bruno Contreras\u2010Moreira","orcid":"https://orcid.org/0000-0002-5462-907X"},"institutions":[{"id":"https://openalex.org/I4210085944","display_name":"Fundacion Agencia Aragonesa para la Investigacion y el Desarrollo","ror":"https://ror.org/007bpwb04","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210085944"]},{"id":"https://openalex.org/I4210143242","display_name":"Estaci\u00f3n Experimental de Aula Dei","ror":"https://ror.org/056a37x91","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210143242"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Bruno Contreras-Moreira","raw_affiliation_strings":["Fundaci\u00f3n ARAID, Paseo Mar\u00eda Agust\u00edn 36, Zaragoza, Espa\u00f1a","Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza, Espa\u00f1a","Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Zaragoza, Espa\u00f1a and Fundaci\u00f3n ARAID, Zaragoza, Espa\u00f1a#TAB#"],"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n ARAID, Paseo Mar\u00eda Agust\u00edn 36, Zaragoza, Espa\u00f1a","institution_ids":["https://openalex.org/I4210085944"]},{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Av. Monta\u00f1ana 1005, Zaragoza, Espa\u00f1a","institution_ids":["https://openalex.org/I4210143242"]},{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Computacional, Estaci\u00f3n Experimental de Aula Dei/CSIC, Zaragoza, Espa\u00f1a and Fundaci\u00f3n ARAID, Zaragoza, Espa\u00f1a#TAB#","institution_ids":["https://openalex.org/I4210143242","https://openalex.org/I4210085944"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010459612"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210143242"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04761905,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"72","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/homeobox","display_name":"Homeobox","score":0.8326895236968994},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5921365022659302},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5704178214073181},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5000953674316406},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.46845245361328125},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.4320386052131653},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4271449148654938},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40061333775520325},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3268083333969116},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3265853524208069},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.292746901512146},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.18931519985198975}],"concepts":[{"id":"https://openalex.org/C121587040","wikidata":"https://www.wikidata.org/wiki/Q898769","display_name":"Homeobox","level":4,"score":0.8326895236968994},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5921365022659302},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5704178214073181},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5000953674316406},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.46845245361328125},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.4320386052131653},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4271449148654938},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40061333775520325},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3268083333969116},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3265853524208069},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.292746901512146},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.18931519985198975},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-642-28062-7_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-28062-7_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:digital.csic.es:10261/51825","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/51825","pdf_url":null,"source":{"id":"https://openalex.org/S4306401639","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Cap\u00edtulo de libro"}],"best_oa_location":{"id":"pmh:oai:digital.csic.es:10261/51825","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/51825","pdf_url":null,"source":{"id":"https://openalex.org/S4306401639","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Cap\u00edtulo de libro"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1988393300","https://openalex.org/W2003967338","https://openalex.org/W2006788765","https://openalex.org/W2055043387","https://openalex.org/W2070871842","https://openalex.org/W2080152736","https://openalex.org/W2085277871","https://openalex.org/W2116109811","https://openalex.org/W2117069457","https://openalex.org/W2119804413","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2141354959","https://openalex.org/W2143210482","https://openalex.org/W2145091349","https://openalex.org/W2147135057"],"related_works":["https://openalex.org/W1984143972","https://openalex.org/W2055166643","https://openalex.org/W2099810742","https://openalex.org/W2030922238","https://openalex.org/W2083530700","https://openalex.org/W1776902257","https://openalex.org/W2009673058","https://openalex.org/W3203542874","https://openalex.org/W1974642429","https://openalex.org/W2039285586"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
