{"id":"https://openalex.org/W2096059288","doi":"https://doi.org/10.1007/978-3-642-24855-9_22","title":"Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis","display_name":"Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2096059288","doi":"https://doi.org/10.1007/978-3-642-24855-9_22","mag":"2096059288"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-24855-9_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-24855-9_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022770733","display_name":"Sepideh Babaei","orcid":"https://orcid.org/0000-0002-5957-6907"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sepideh Babaei","raw_affiliation_strings":["Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","Netherlands Bioinformatics Centre, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, The Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025866865","display_name":"Erik B. van den Akker","orcid":"https://orcid.org/0000-0002-7693-0728"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Erik van den Akker","raw_affiliation_strings":["Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","Molecular Epidemiology, Leiden University Medical Centre, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]},{"raw_affiliation_string":"Molecular Epidemiology, Leiden University Medical Centre, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071483953","display_name":"Jeroen de Ridder","orcid":"https://orcid.org/0000-0002-0828-3477"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jeroen de Ridder","raw_affiliation_strings":["Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","Netherlands Bioinformatics Centre, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, The Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052699801","display_name":"Marcel Reinders","orcid":"https://orcid.org/0000-0002-1148-1562"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marcel Reinders","raw_affiliation_strings":["Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","Netherlands Bioinformatics Centre, The Netherlands","Pattern Recognition Laboratory, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Delft Bioinformatics Lab, Delft University of Technology, The Netherlands","institution_ids":["https://openalex.org/I98358874"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, The Netherlands","institution_ids":["https://openalex.org/I2801582894"]},{"raw_affiliation_string":"Pattern Recognition Laboratory, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands","institution_ids":["https://openalex.org/I98358874"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"247","last_page":"259"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6039236187934875},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5909613370895386},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5824838280677795},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5682003498077393},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4697183668613434},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41880345344543457},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4043639004230499},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3972260057926178},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3676679730415344},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36312535405158997},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.2901228070259094},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.16371828317642212}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6039236187934875},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5909613370895386},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5824838280677795},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5682003498077393},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4697183668613434},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41880345344543457},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4043639004230499},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3972260057926178},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3676679730415344},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36312535405158997},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.2901228070259094},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16371828317642212}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-24855-9_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-24855-9_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.800000011920929}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1522879439","https://openalex.org/W1996112765","https://openalex.org/W2004280628","https://openalex.org/W2009205364","https://openalex.org/W2018486347","https://openalex.org/W2057626690","https://openalex.org/W2077922582","https://openalex.org/W2106391842","https://openalex.org/W2112174151","https://openalex.org/W2118069309","https://openalex.org/W2128957040","https://openalex.org/W2128985829","https://openalex.org/W2141885858","https://openalex.org/W2154947819","https://openalex.org/W2157132621","https://openalex.org/W2158217645","https://openalex.org/W2160450758","https://openalex.org/W2169679536","https://openalex.org/W2187089797","https://openalex.org/W2188212427","https://openalex.org/W2216040507","https://openalex.org/W2745750801","https://openalex.org/W2802808353","https://openalex.org/W4210623056"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2770593030","https://openalex.org/W3154990682","https://openalex.org/W2560201613","https://openalex.org/W2171975302","https://openalex.org/W2022352247","https://openalex.org/W4312219546","https://openalex.org/W2377538627","https://openalex.org/W2107220315","https://openalex.org/W1589637664"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
